EnhancerDB
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  3. vista42351[chr3:127886942-127887322]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42351[chr3:127886942-127887322]
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Tissue distribution of vista42351
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Transcription factor that possibly regulate vista42351[chr3:127886942-127887322]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 127886778 127887148 POLR2A UCSC Txn Factor no Conserved 108530282
chr3 127886997 127887351 TEAD4 UCSC Txn Factor no Conserved 108530283
chr3 127887010 127887260 SP1 UCSC Txn Factor no Conserved 108530284
chr3 127886941 127886948 JUN TRANSFAC yes 5568401
chr3 127886941 127886948 JUN TRANSFAC yes 71048558
chr3 127886986 127886991 TFAP2A TRANSFAC yes 5568402
chr3 127886986 127886991 TFAP2A TRANSFAC yes 71048559
chr3 127886986 127886992 MZF1 JASPAR yes 5568403
chr3 127886986 127886992 MZF1 JASPAR yes 71048560
chr3 127886987 127886997 SP1 JASPAR yes 5568404
chr3 127886987 127886997 SP1 JASPAR yes 71048561
chr3 127886989 127886999 MZF1 JASPAR yes 5568405
chr3 127886989 127886999 MZF1 JASPAR yes 71048562
chr3 127886992 127886997 TFAP2A TRANSFAC yes 5568406
chr3 127886992 127886997 TFAP2A TRANSFAC yes 71048563
chr3 127886992 127886998 MZF1 JASPAR yes 5568407
chr3 127886992 127886998 MZF1 JASPAR yes 71048564
chr3 127887029 127887037 HOXA5 JASPAR yes 5568408
chr3 127887029 127887037 HOXA5 JASPAR yes 71048565
chr3 127887055 127887076 ZNF263 JASPAR yes 5568409
chr3 127887055 127887076 ZNF263 JASPAR yes 71048566
chr3 127887075 127887086 EBF1 JASPAR yes 5568410
chr3 127887075 127887086 EBF1 JASPAR yes 71048567
chr3 127887086 127887098 TEAD1 JASPAR yes 5568411
chr3 127887086 127887098 TEAD1 JASPAR yes 71048568
chr3 127887087 127887094 SPIB JASPAR yes 5568412
chr3 127887087 127887094 SPIB JASPAR yes 71048569
chr3 127887088 127887098 TEAD1 JASPAR yes 5568413
chr3 127887088 127887098 TEAD4 JASPAR yes 5568414
chr3 127887088 127887098 TEAD1 JASPAR yes 71048570
chr3 127887088 127887098 TEAD4 JASPAR yes 71048571
chr3 127887089 127887097 TEAD3 JASPAR yes 5568415
chr3 127887089 127887097 TEAD3 JASPAR yes 71048572
chr3 127887096 127887108 PKNOX1 JASPAR yes 5568416
chr3 127887096 127887108 PKNOX2 JASPAR yes 5568417
chr3 127887096 127887108 TGIF1 JASPAR yes 5568418
chr3 127887096 127887108 TGIF2 JASPAR yes 5568419
chr3 127887096 127887108 PKNOX1 JASPAR yes 71048573
chr3 127887096 127887108 PKNOX2 JASPAR yes 71048574
chr3 127887096 127887108 TGIF1 JASPAR yes 71048575
chr3 127887096 127887108 TGIF2 JASPAR yes 71048576
chr3 127887097 127887107 MSC JASPAR yes 5568420
chr3 127887097 127887107 MSC JASPAR yes 71048577
chr3 127887102 127887106 NFE TRANSFAC yes 5568421
chr3 127887102 127887106 NFE TRANSFAC yes 71048578
chr3 127887136 127887144 FOXO3 JASPAR yes 5568422
chr3 127887136 127887144 FOXO3 JASPAR yes 71048579
chr3 127887147 127887164 RARA JASPAR yes 5568423
chr3 127887147 127887164 RARA JASPAR yes 71048580
chr3 127887154 127887164 RORA JASPAR yes 5568424
chr3 127887154 127887164 RORA JASPAR yes 71048581
chr3 127887155 127887168 NR2F1 JASPAR yes 5568425
chr3 127887155 127887168 NR2F1 JASPAR yes 71048582
chr3 127887157 127887165 NR4A2 JASPAR yes 5568426
chr3 127887157 127887165 NR4A2 JASPAR yes 71048583
chr3 127887159 127887163 ESR1 TRANSFAC yes 5568427
chr3 127887159 127887163 ESR1 TRANSFAC yes 71048584
chr3 127887164 127887168 NFE TRANSFAC yes 5568428
chr3 127887164 127887168 NFE TRANSFAC yes 71048585
chr3 127887184 127887199 HNF4G JASPAR yes 5568429
chr3 127887184 127887199 HNF4G JASPAR yes 71048586
chr3 127887185 127887199 NR2F1 JASPAR yes 5568430
chr3 127887185 127887199 NR2F1 JASPAR yes 71048587
chr3 127887185 127887200 HNF4A JASPAR yes 5568431
chr3 127887185 127887200 HNF4A JASPAR yes 71048588
chr3 127887186 127887190 H4TF2 TRANSFAC yes 5568432
chr3 127887186 127887190 H4TF2 TRANSFAC yes 71048589
chr3 127887225 127887240 RFX5 JASPAR yes 5568433
chr3 127887225 127887240 RFX5 JASPAR yes 71048590
chr3 127887244 127887258 RXRB JASPAR yes 5568434
chr3 127887244 127887258 RXRG JASPAR yes 5568435
chr3 127887244 127887258 RXRB JASPAR yes 71048591
chr3 127887244 127887258 RXRG JASPAR yes 71048592
chr3 127887276 127887280 YY1 TRANSFAC yes 5568436
chr3 127887276 127887280 YY1 TRANSFAC yes 71048593
chr3 127887291 127887306 FOXP1 JASPAR yes 5568437
chr3 127887291 127887306 FOXP1 JASPAR yes 71048594
chr3 127887297 127887303 TBP TRANSFAC yes 5568438
chr3 127887297 127887303 TBP TRANSFAC yes 71048595
chr3 127887311 127887316 TFAP2A TRANSFAC yes 5568439
chr3 127887311 127887316 TFAP2A TRANSFAC yes 71048596
chr3 127887311 127887317 MZF1 JASPAR yes 5568440
chr3 127887311 127887317 MZF1 JASPAR yes 71048597
chr3 127887320 127887327 SPIB JASPAR yes 5568441
chr3 127887320 127887327 SPIB JASPAR yes 71048598
chr3 127887321 127887329 EHF JASPAR yes 5568442
chr3 127887321 127887329 EHF JASPAR yes 71048599
SNP sites on vista42351[chr3:127886942-127887322]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 127886957 rs10934850 G A
POLR2A
7017323
chr3 127887004 rs144714249 G A
POLR2A TEAD4
7017324
chr3 127887018 rs148123066 T C
POLR2A SP1 TEAD4
7017325
chr3 127887243 rs560974501 G A
SP1 TEAD4
7017326
Genes possibly regulated by vista42351[chr3:127886942-127887322]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 127783621 127872757 - RUVBL1 ENSG00000175792.7 127872757 0.8 1.0 4050 85815
chr3 127872297 128127485 + EEFSEC ENSG00000132394.6 127872297 0.62 1.0 4051 85355
Expression level of Genes
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miRNAs possibly regulated by vista42351[chr3:127886942-127887322]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results