EnhancerDB
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  3. vista42368[chr3:128325000-128325227]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42368[chr3:128325000-128325227]
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Tissue distribution of vista42368
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Transcription factor that possibly regulate vista42368[chr3:128325000-128325227]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 128325005 128325009 NFE TRANSFAC yes 5615104
chr3 128325005 128325009 NFE TRANSFAC yes 71049378
chr3 128325025 128325035 CLOCK JASPAR yes 5615105
chr3 128325025 128325035 CLOCK JASPAR yes 71049379
chr3 128325034 128325037 MYB TRANSFAC yes 5615106
chr3 128325034 128325037 MYB TRANSFAC yes 71049380
chr3 128325046 128325067 IRF1 JASPAR yes 5615107
chr3 128325046 128325067 IRF1 JASPAR yes 71049381
chr3 128325047 128325068 IRF1 JASPAR yes 5615108
chr3 128325047 128325068 IRF1 JASPAR yes 71049382
chr3 128325050 128325071 IRF1 JASPAR yes 5615109
chr3 128325050 128325071 IRF1 JASPAR yes 71049383
chr3 128325051 128325066 FOXP1 JASPAR yes 5615110
chr3 128325051 128325066 FOXP1 JASPAR yes 71049384
chr3 128325051 128325072 IRF1 JASPAR yes 5615111
chr3 128325051 128325072 IRF1 JASPAR yes 71049385
chr3 128325052 128325067 FOXP1 JASPAR yes 5615112
chr3 128325052 128325067 FOXP1 JASPAR yes 71049386
chr3 128325053 128325068 FOXP1 JASPAR yes 5615113
chr3 128325053 128325068 FOXP1 JASPAR yes 71049387
chr3 128325054 128325069 FOXP1 JASPAR yes 5615114
chr3 128325054 128325069 FOXP1 JASPAR yes 71049388
chr3 128325055 128325070 FOXP1 JASPAR yes 5615115
chr3 128325055 128325070 FOXP1 JASPAR yes 71049389
chr3 128325056 128325071 FOXP1 JASPAR yes 5615116
chr3 128325056 128325071 FOXP1 JASPAR yes 71049390
chr3 128325057 128325072 FOXP1 JASPAR yes 5615117
chr3 128325057 128325072 FOXP1 JASPAR yes 71049391
chr3 128325058 128325073 FOXP1 JASPAR yes 5615118
chr3 128325058 128325073 FOXP1 JASPAR yes 71049392
chr3 128325059 128325074 FOXP1 JASPAR yes 5615119
chr3 128325059 128325074 FOXP1 JASPAR yes 71049393
chr3 128325070 128325084 GATA2 JASPAR yes 5615120
chr3 128325070 128325084 GATA2 JASPAR yes 71049394
chr3 128325072 128325080 GATA3 JASPAR yes 5615121
chr3 128325072 128325080 GATA5 JASPAR yes 5615122
chr3 128325072 128325080 GATA3 JASPAR yes 71049395
chr3 128325072 128325080 GATA5 JASPAR yes 71049396
chr3 128325087 128325091 NFE TRANSFAC yes 5615123
chr3 128325087 128325091 NFE TRANSFAC yes 71049397
chr3 128325109 128325119 SREBF1 JASPAR yes 5615124
chr3 128325109 128325119 SREBF2 JASPAR yes 5615125
chr3 128325109 128325119 SREBF1 JASPAR yes 71049398
chr3 128325109 128325119 SREBF2 JASPAR yes 71049399
chr3 128325110 128325118 MGA JASPAR yes 5615126
chr3 128325110 128325118 MGA JASPAR yes 71049400
chr3 128325119 128325129 SREBF1 JASPAR yes 5615127
chr3 128325119 128325129 SREBF1 JASPAR yes 71049401
chr3 128325121 128325138 ESR1 JASPAR yes 5615128
chr3 128325121 128325138 ESR1 JASPAR yes 71049402
chr3 128325162 128325172 NKX2-3 JASPAR yes 5615129
chr3 128325162 128325172 NKX2-3 JASPAR yes 71049403
chr3 128325163 128325172 NKX2-8 JASPAR yes 5615130
chr3 128325163 128325172 NKX2-8 JASPAR yes 71049404
chr3 128325171 128325182 EBF1 JASPAR yes 5615131
chr3 128325171 128325182 EBF1 JASPAR yes 71049405
chr3 128325200 128325219 REST JASPAR yes 5615132
chr3 128325200 128325219 REST JASPAR yes 71049406
chr3 128325208 128325217 HIC2 JASPAR yes 5615133
chr3 128325208 128325217 HIC2 JASPAR yes 71049407
chr3 128325226 128325230 YY1 TRANSFAC yes 5615134
chr3 128325226 128325230 YY1 TRANSFAC yes 71049408
SNP sites on vista42368[chr3:128325000-128325227]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 128325025 rs143055641 G A
CLOCK
7021467
chr3 128325052 rs202131125 ATTTT A
FOXP1 IRF1
7021468
chr3 128325052 rs576007620 ATTTT A
FOXP1 IRF1
7021469
chr3 128325141 rs148223163 C T no 7021470
chr3 128325146 rs139749287 T A no 7021471
chr3 128325170 rs150303178 C G
NKX2-3 NKX2-8
7021472
Genes possibly regulated by vista42368[chr3:128325000-128325227]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 128290843 128294929 - C3orf27 ENSG00000198685.2 128294929 0.93 1.0 4054 69929
chr3 128338817 128399918 - RPN1 ENSG00000163902.7 128399918 0.61 1.0 4055 25309
Expression level of Genes
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miRNAs possibly regulated by vista42368[chr3:128325000-128325227]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results