EnhancerDB
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  3. vista42381[chr3:128564550-128565114]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42381[chr3:128564550-128565114]
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Tissue distribution of vista42381
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Transcription factor that possibly regulate vista42381[chr3:128564550-128565114]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 128564650 128565147 E2F1 UCSC Txn Factor no Conserved 108530320
chr3 128564731 128565418 CTCF UCSC Txn Factor no Conserved 108530321
chr3 128564804 128565012 CTCFL UCSC Txn Factor no Conserved 108530322
chr3 128565103 128565339 RAD21 UCSC Txn Factor no Conserved 108530323
chr3 128564551 128564572 ZNF263 JASPAR yes 5630168
chr3 128564551 128564572 ZNF263 JASPAR yes 71049861
chr3 128564577 128564590 TFAP2A JASPAR yes 5630169
chr3 128564577 128564590 TFAP2B JASPAR yes 5630170
chr3 128564577 128564590 TFAP2C JASPAR yes 5630171
chr3 128564577 128564590 TFAP2A JASPAR yes 71049862
chr3 128564577 128564590 TFAP2B JASPAR yes 71049863
chr3 128564577 128564590 TFAP2C JASPAR yes 71049864
chr3 128564592 128564600 MEIS3 JASPAR yes 5630172
chr3 128564592 128564600 MEIS3 JASPAR yes 71049865
chr3 128564596 128564616 PPARG JASPAR yes 5630173
chr3 128564596 128564616 PPARG JASPAR yes 71049866
chr3 128564608 128564621 TFAP2A JASPAR yes 5630174
chr3 128564608 128564621 TFAP2B JASPAR yes 5630175
chr3 128564608 128564621 TFAP2C JASPAR yes 5630176
chr3 128564608 128564621 TFAP2A JASPAR yes 71049867
chr3 128564608 128564621 TFAP2B JASPAR yes 71049868
chr3 128564608 128564621 TFAP2C JASPAR yes 71049869
chr3 128564616 128564620 LFA1 TRANSFAC yes 5630177
chr3 128564616 128564620 LFA1 TRANSFAC yes 71049870
chr3 128564623 128564632 TFAP2A JASPAR yes 5630178
chr3 128564623 128564632 TFAP2A JASPAR yes 71049871
chr3 128564642 128564651 SP1 TRANSFAC yes 5630179
chr3 128564642 128564651 SP1 TRANSFAC yes 71049872
chr3 128564666 128564680 EBF1 JASPAR yes 5630180
chr3 128564666 128564680 EBF1 JASPAR yes 71049873
chr3 128564693 128564705 NHLH1 JASPAR yes 5630181
chr3 128564693 128564705 NHLH1 JASPAR yes 71049874
chr3 128564694 128564704 NHLH1 JASPAR yes 5630182
chr3 128564694 128564704 NHLH1 JASPAR yes 71049875
chr3 128564747 128564766 RFX2 JASPAR yes 5630183
chr3 128564747 128564766 RFX2 JASPAR yes 71049876
chr3 128564751 128564767 RFX2 JASPAR yes 5630184
chr3 128564751 128564767 RFX3 JASPAR yes 5630185
chr3 128564751 128564767 RFX4 JASPAR yes 5630186
chr3 128564751 128564767 RFX5 JASPAR yes 5630187
chr3 128564751 128564767 RFX2 JASPAR yes 71049877
chr3 128564751 128564767 RFX3 JASPAR yes 71049878
chr3 128564751 128564767 RFX4 JASPAR yes 71049879
chr3 128564751 128564767 RFX5 JASPAR yes 71049880
chr3 128564752 128564771 RFX2 JASPAR yes 5630188
chr3 128564752 128564771 RFX2 JASPAR yes 71049881
chr3 128564766 128564776 SP1 JASPAR yes 5630189
chr3 128564766 128564776 SP1 JASPAR yes 71049882
chr3 128564767 128564775 SP1 TRANSFAC yes 5630190
chr3 128564767 128564775 SP1 TRANSFAC yes 71049883
chr3 128564767 128564776 SP1 TRANSFAC yes 5630191
chr3 128564767 128564776 SP1 TRANSFAC yes 71049884
chr3 128564768 128564773 SP1 TRANSFAC yes 5630192
chr3 128564768 128564773 SP1 TRANSFAC yes 71049885
chr3 128564769 128564774 SP1 TRANSFAC yes 5630193
chr3 128564769 128564774 SP1 TRANSFAC yes 71049886
chr3 128564769 128564775 SP1 TRANSFAC yes 5630194
chr3 128564769 128564775 SP1 TRANSFAC yes 71049887
chr3 128564772 128564777 SP1 TRANSFAC yes 5630195
chr3 128564772 128564777 SP1 TRANSFAC yes 71049888
chr3 128564777 128564788 E2F1 JASPAR yes 5630196
chr3 128564777 128564788 E2F1 JASPAR yes 71049889
chr3 128564778 128564783 SP1 TRANSFAC yes 5630197
chr3 128564778 128564783 SP1 TRANSFAC yes 71049890
chr3 128564785 128564795 SP1 JASPAR yes 5630198
chr3 128564785 128564795 SP1 JASPAR yes 71049891
chr3 128564786 128564794 SP1 TRANSFAC yes 5630199
chr3 128564786 128564794 SP1 TRANSFAC yes 71049892
chr3 128564786 128564795 SP1 TRANSFAC yes 5630200
chr3 128564786 128564795 SP1 TRANSFAC yes 71049893
chr3 128564786 128564796 SP1 JASPAR yes 5630201
chr3 128564786 128564796 SP1 JASPAR yes 71049894
chr3 128564787 128564792 SP1 TRANSFAC yes 5630202
chr3 128564787 128564792 SP1 TRANSFAC yes 71049895
chr3 128564788 128564793 SP1 TRANSFAC yes 5630203
chr3 128564788 128564793 SP1 TRANSFAC yes 71049896
chr3 128564788 128564794 SP1 TRANSFAC yes 5630204
chr3 128564788 128564794 SP1 TRANSFAC yes 71049897
chr3 128564794 128564803 HIC2 JASPAR yes 5630205
chr3 128564794 128564803 HIC2 JASPAR yes 71049898
chr3 128564809 128564818 THAP1 JASPAR yes 5630206
chr3 128564809 128564818 THAP1 JASPAR yes 71049899
chr3 128564811 128564818 SP1 TRANSFAC yes 5630207
chr3 128564811 128564818 SP1 TRANSFAC yes 71049900
chr3 128564812 128564832 RREB1 JASPAR yes 5630208
chr3 128564812 128564832 RREB1 JASPAR yes 71049901
chr3 128564813 128564818 SP1 TRANSFAC yes 5630209
chr3 128564813 128564818 SP1 TRANSFAC yes 71049902
chr3 128564816 128564836 RREB1 JASPAR yes 5630210
chr3 128564816 128564836 RREB1 JASPAR yes 71049903
chr3 128564823 128564831 E2F1 JASPAR yes 5630211
chr3 128564823 128564831 E2F1 JASPAR yes 71049904
chr3 128564823 128564843 RREB1 JASPAR yes 5630212
chr3 128564823 128564843 RREB1 JASPAR yes 71049905
chr3 128564830 128564845 RUNX2 JASPAR yes 5630213
chr3 128564830 128564845 RUNX2 JASPAR yes 71049906
chr3 128564833 128564853 RREB1 JASPAR yes 5630214
chr3 128564833 128564853 RREB1 JASPAR yes 71049907
chr3 128564844 128564852 E2F1 JASPAR yes 5630215
chr3 128564844 128564852 E2F1 JASPAR yes 71049908
chr3 128564855 128564870 HNF4G JASPAR yes 5630216
chr3 128564855 128564870 HNF4G JASPAR yes 71049909
chr3 128564856 128564870 NR2F1 JASPAR yes 5630217
chr3 128564856 128564870 NR2F1 JASPAR yes 71049910
chr3 128564856 128564871 HNF4A JASPAR yes 5630218
chr3 128564856 128564871 HNF4A JASPAR yes 71049911
chr3 128564880 128564886 NFE2 TRANSFAC yes 5630219
chr3 128564880 128564886 NFE2 TRANSFAC yes 71049912
chr3 128564882 128564896 GLIS2 JASPAR yes 5630220
chr3 128564882 128564896 GLIS2 JASPAR yes 71049913
chr3 128564896 128564915 CTCF JASPAR yes 5630221
chr3 128564896 128564915 CTCF JASPAR yes 71049914
chr3 128564910 128564914 H4TF2 TRANSFAC yes 5630222
chr3 128564910 128564914 H4TF2 TRANSFAC yes 71049915
chr3 128564961 128564965 NFE TRANSFAC yes 5630223
chr3 128564961 128564965 NFE TRANSFAC yes 71049916
chr3 128564962 128564974 NHLH1 JASPAR yes 5630224
chr3 128564962 128564974 NHLH1 JASPAR yes 71049917
chr3 128564963 128564973 TFAP4 JASPAR yes 5630225
chr3 128564963 128564973 TFAP4 JASPAR yes 71049918
chr3 128564971 128564975 H4TF2 TRANSFAC yes 5630226
chr3 128564971 128564975 H4TF2 TRANSFAC yes 71049919
chr3 128565001 128565010 TFAP2A JASPAR yes 5630227
chr3 128565001 128565010 TFAP2A JASPAR yes 71049920
chr3 128565008 128565012 ESR1 TRANSFAC yes 5630228
chr3 128565008 128565012 ESR1 TRANSFAC yes 71049921
chr3 128565040 128565044 H4TF2 TRANSFAC yes 5630229
chr3 128565040 128565044 H4TF2 TRANSFAC yes 71049922
chr3 128565072 128565080 EHF JASPAR yes 5630230
chr3 128565072 128565080 EHF JASPAR yes 71049923
chr3 128565082 128565096 ZIC1 JASPAR yes 5630231
chr3 128565082 128565096 ZIC1 JASPAR yes 71049924
chr3 128565082 128565097 ZIC4 JASPAR yes 5630232
chr3 128565082 128565097 ZIC4 JASPAR yes 71049925
chr3 128565084 128565089 SP1 TRANSFAC yes 5630233
chr3 128565084 128565089 SP1 TRANSFAC yes 71049926
chr3 128565100 128565121 REST JASPAR yes 5630234
chr3 128565100 128565121 REST JASPAR yes 71049927
SNP sites on vista42381[chr3:128564550-128565114]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 128564604 rs114366529 A T
PPARG
7022917
chr3 128564660 rs143050868 C T
E2F1
7022918
chr3 128564666 rs561137122 C T
E2F1 EBF1
7022919
chr3 128564708 rs531749360 C T
E2F1
7022920
chr3 128564825 rs180799428 C T
CTCF CTCFL E2F1 RREB1
7022921
chr3 128565039 rs4927896 T C
CTCF E2F1
7022922
chr3 128565054 rs7646287 C A,T
CTCF E2F1
7022923
chr3 128565058 rs535148323 G A
CTCF E2F1
7022924
Genes possibly regulated by vista42381[chr3:128564550-128565114]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 128598439 128634910 + ACAD9 ENSG00000177646.13 128598439 0.55 1.0 4057 66675
Expression level of Genes
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miRNAs possibly regulated by vista42381[chr3:128564550-128565114]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results