EnhancerDB
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  3. vista42387[chr3:128735204-128735460]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42387[chr3:128735204-128735460]
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Tissue distribution of vista42387
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Transcription factor that possibly regulate vista42387[chr3:128735204-128735460]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 128735212 128735684 CTCF UCSC Txn Factor no Conserved 108530328
chr3 128735239 128735249 HOXC10 JASPAR yes 5636598
chr3 128735239 128735249 HOXD11 JASPAR yes 5636599
chr3 128735239 128735249 HOXC10 JASPAR yes 71050177
chr3 128735239 128735249 HOXD11 JASPAR yes 71050178
chr3 128735240 128735249 CDX1 JASPAR yes 5636600
chr3 128735240 128735249 CDX1 JASPAR yes 71050179
chr3 128735240 128735251 CDX2 JASPAR yes 5636601
chr3 128735240 128735251 CDX2 JASPAR yes 71050180
chr3 128735245 128735258 ELF1 JASPAR yes 5636602
chr3 128735245 128735258 ELF1 JASPAR yes 71050181
chr3 128735246 128735258 EHF JASPAR yes 5636603
chr3 128735246 128735258 ELF1 JASPAR yes 5636604
chr3 128735246 128735258 ELF4 JASPAR yes 5636605
chr3 128735246 128735258 EHF JASPAR yes 71050182
chr3 128735246 128735258 ELF1 JASPAR yes 71050183
chr3 128735246 128735258 ELF4 JASPAR yes 71050184
chr3 128735246 128735259 ELF3 JASPAR yes 5636606
chr3 128735246 128735259 ELF3 JASPAR yes 71050185
chr3 128735247 128735258 ELF5 JASPAR yes 5636607
chr3 128735247 128735258 ELF5 JASPAR yes 71050186
chr3 128735248 128735259 FLI1 JASPAR yes 5636608
chr3 128735248 128735259 FLI1 JASPAR yes 71050187
chr3 128735249 128735254 ETS2 TRANSFAC yes 5636609
chr3 128735249 128735254 ETS2 TRANSFAC yes 71050188
chr3 128735249 128735257 FEV JASPAR yes 5636610
chr3 128735249 128735257 FEV JASPAR yes 71050189
chr3 128735250 128735257 SPI1 JASPAR yes 5636611
chr3 128735250 128735257 SPI1 JASPAR yes 71050190
chr3 128735266 128735280 GLIS3 JASPAR yes 5636612
chr3 128735266 128735280 GLIS3 JASPAR yes 71050191
chr3 128735300 128735314 SPI1 JASPAR yes 5636613
chr3 128735300 128735314 SPI1 JASPAR yes 71050192
chr3 128735306 128735311 ETS2 TRANSFAC yes 5636614
chr3 128735306 128735311 ETS2 TRANSFAC yes 71050193
chr3 128735310 128735323 SMAD2 JASPAR yes 5636615
chr3 128735310 128735323 SMAD2 JASPAR yes 71050194
chr3 128735313 128735332 CTCF JASPAR yes 5636616
chr3 128735313 128735332 CTCF JASPAR yes 71050195
chr3 128735318 128735327 SNAI2 JASPAR yes 5636617
chr3 128735318 128735327 SNAI2 JASPAR yes 71050196
chr3 128735318 128735328 ID4 JASPAR yes 5636618
chr3 128735318 128735328 ID4 JASPAR yes 71050197
chr3 128735334 128735338 LFA1 TRANSFAC yes 5636619
chr3 128735334 128735338 LFA1 TRANSFAC yes 71050198
chr3 128735338 128735343 SP1 TRANSFAC yes 5636620
chr3 128735338 128735343 SP1 TRANSFAC yes 71050199
chr3 128735349 128735364 TFAP2A JASPAR yes 5636621
chr3 128735349 128735364 TFAP2A JASPAR yes 71050200
chr3 128735352 128735366 EBF1 JASPAR yes 5636622
chr3 128735352 128735366 EBF1 JASPAR yes 71050201
chr3 128735354 128735365 EBF1 JASPAR yes 5636623
chr3 128735354 128735365 EBF1 JASPAR yes 71050202
chr3 128735358 128735363 TFAP2A TRANSFAC yes 5636624
chr3 128735358 128735363 TFAP2A TRANSFAC yes 71050203
chr3 128735358 128735364 MZF1 JASPAR yes 5636625
chr3 128735358 128735364 MZF1 JASPAR yes 71050204
chr3 128735358 128735369 NF-kappaB TRANSFAC yes 5636626
chr3 128735358 128735369 NF-kappaB TRANSFAC yes 71050205
chr3 128735358 128735371 NFKB1 JASPAR yes 5636627
chr3 128735358 128735371 NFKB1 JASPAR yes 71050206
chr3 128735359 128735370 NFKB1 JASPAR yes 5636628
chr3 128735359 128735370 NFKB1 JASPAR yes 71050207
chr3 128735360 128735365 ETS2 TRANSFAC yes 5636629
chr3 128735360 128735365 ETS2 TRANSFAC yes 71050208
chr3 128735360 128735370 RELA JASPAR yes 5636630
chr3 128735360 128735370 RELA JASPAR yes 71050209
chr3 128735384 128735403 CTCF JASPAR yes 5636631
chr3 128735384 128735403 CTCF JASPAR yes 71050210
chr3 128735388 128735398 ID4 JASPAR yes 5636632
chr3 128735388 128735398 ID4 JASPAR yes 71050211
chr3 128735389 128735398 SNAI2 JASPAR yes 5636633
chr3 128735389 128735398 SNAI2 JASPAR yes 71050212
chr3 128735390 128735395 USF2 TRANSFAC yes 5636634
chr3 128735390 128735395 USF2 TRANSFAC yes 71050213
chr3 128735393 128735406 SMAD2 JASPAR yes 5636635
chr3 128735393 128735406 SMAD2 JASPAR yes 71050214
chr3 128735413 128735424 FOXH1 JASPAR yes 5636636
chr3 128735413 128735424 FOXH1 JASPAR yes 71050215
chr3 128735414 128735420 ZNF354C JASPAR yes 5636637
chr3 128735414 128735420 ZNF354C JASPAR yes 71050216
chr3 128735428 128735432 YY1 TRANSFAC yes 5636638
chr3 128735428 128735432 YY1 TRANSFAC yes 71050217
chr3 128735457 128735466 SNAI2 JASPAR yes 5636639
chr3 128735457 128735466 SNAI2 JASPAR yes 71050218
chr3 128735458 128735463 USF2 TRANSFAC yes 5636640
chr3 128735458 128735463 USF2 TRANSFAC yes 71050219
SNP sites on vista42387[chr3:128735204-128735460]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 128735345 rs77296720 G A
CTCF
7023665
chr3 128735377 rs78301508 G A
CTCF
7023666
chr3 128735392 rs575753894 A C
CTCF ID4 SNAI2 USF2
7023667
Genes possibly regulated by vista42387[chr3:128735204-128735460]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 128628709 128721533 - KIAA1257 ENSG00000114656.6 128721533 0.95 1.0 4058 86329
chr3 128628717 128690173 - RP11-723O4.6 ENSG00000187695.6 128690173 0.95 1.0 4059 54969
chr3 128720472 128759585 + EFCC1 ENSG00000114654.6 128720472 0.85 1.0 4060 85268
chr3 128779610 128781249 + GP9 ENSG00000169704.4 128779610 0.98 0.0 4061 55850
Expression level of Genes
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miRNAs possibly regulated by vista42387[chr3:128735204-128735460]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results