EnhancerDB
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  3. vista42396[chr3:128947996-128948470]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42396[chr3:128947996-128948470]
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Tissue distribution of vista42396
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Transcription factor that possibly regulate vista42396[chr3:128947996-128948470]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 128947990 128947996 YY1 JASPAR yes 5647172
chr3 128947990 128947996 YY1 JASPAR yes 71050600
chr3 128947992 128948011 CTCF JASPAR yes 5647173
chr3 128947992 128948011 CTCF JASPAR yes 71050601
chr3 128947996 128948006 MSC JASPAR yes 5647174
chr3 128947996 128948006 MSC JASPAR yes 71050602
chr3 128948010 128948025 NR2C2 JASPAR yes 5647175
chr3 128948010 128948025 NR2C2 JASPAR yes 71050603
chr3 128948017 128948032 NR2C2 JASPAR yes 5647176
chr3 128948017 128948032 NR2C2 JASPAR yes 71050604
chr3 128948041 128948052 FLI1 JASPAR yes 5647177
chr3 128948041 128948052 FLI1 JASPAR yes 71050605
chr3 128948042 128948052 GABPA JASPAR yes 5647178
chr3 128948042 128948052 GABPA JASPAR yes 71050606
chr3 128948042 128948055 ELF1 JASPAR yes 5647179
chr3 128948042 128948055 ELF1 JASPAR yes 71050607
chr3 128948048 128948052 NFE TRANSFAC yes 5647180
chr3 128948048 128948052 NFE TRANSFAC yes 71050608
chr3 128948050 128948061 FLI1 JASPAR yes 5647181
chr3 128948050 128948061 FLI1 JASPAR yes 71050609
chr3 128948051 128948062 ETV2 JASPAR yes 5647182
chr3 128948051 128948062 ETV2 JASPAR yes 71050610
chr3 128948051 128948065 SPIC JASPAR yes 5647183
chr3 128948051 128948065 SPIC JASPAR yes 71050611
chr3 128948052 128948060 EHF JASPAR yes 5647184
chr3 128948052 128948060 EHF JASPAR yes 71050612
chr3 128948053 128948066 SCRT2 JASPAR yes 5647185
chr3 128948053 128948066 SCRT2 JASPAR yes 71050613
chr3 128948073 128948084 E2F6 JASPAR yes 5647186
chr3 128948073 128948084 E2F6 JASPAR yes 71050614
chr3 128948076 128948097 ZNF263 JASPAR yes 5647187
chr3 128948076 128948097 ZNF263 JASPAR yes 71050615
chr3 128948077 128948087 ZNF740 JASPAR yes 5647188
chr3 128948077 128948087 ZNF740 JASPAR yes 71050616
chr3 128948080 128948086 MZF1 JASPAR yes 5647189
chr3 128948080 128948086 MZF1 JASPAR yes 71050617
chr3 128948083 128948094 ELK4 JASPAR yes 5647190
chr3 128948083 128948094 FLI1 JASPAR yes 5647191
chr3 128948083 128948094 ELK4 JASPAR yes 71050618
chr3 128948083 128948094 FLI1 JASPAR yes 71050619
chr3 128948083 128948096 ELF3 JASPAR yes 5647192
chr3 128948083 128948096 ELF3 JASPAR yes 71050620
chr3 128948084 128948094 ERF JASPAR yes 5647193
chr3 128948084 128948094 ETS1 JASPAR yes 5647194
chr3 128948084 128948094 ETV6 JASPAR yes 5647195
chr3 128948084 128948094 GABPA JASPAR yes 5647196
chr3 128948084 128948094 ERF JASPAR yes 71050621
chr3 128948084 128948094 ETS1 JASPAR yes 71050622
chr3 128948084 128948094 ETV6 JASPAR yes 71050623
chr3 128948084 128948094 GABPA JASPAR yes 71050624
chr3 128948084 128948095 ELF5 JASPAR yes 5647197
chr3 128948084 128948095 ELF5 JASPAR yes 71050625
chr3 128948084 128948096 EHF JASPAR yes 5647198
chr3 128948084 128948096 ELF1 JASPAR yes 5647199
chr3 128948084 128948096 ELF4 JASPAR yes 5647200
chr3 128948084 128948096 EHF JASPAR yes 71050626
chr3 128948084 128948096 ELF1 JASPAR yes 71050627
chr3 128948084 128948096 ELF4 JASPAR yes 71050628
chr3 128948084 128948097 ELF1 JASPAR yes 5647201
chr3 128948084 128948097 ELF1 JASPAR yes 71050629
chr3 128948085 128948092 SPI1 JASPAR yes 5647202
chr3 128948085 128948092 SPI1 JASPAR yes 71050630
chr3 128948085 128948093 EHF JASPAR yes 5647203
chr3 128948085 128948093 FEV JASPAR yes 5647204
chr3 128948085 128948093 EHF JASPAR yes 71050631
chr3 128948085 128948093 FEV JASPAR yes 71050632
chr3 128948086 128948103 PAX1 JASPAR yes 5647205
chr3 128948086 128948103 PAX9 JASPAR yes 5647206
chr3 128948086 128948103 PAX1 JASPAR yes 71050633
chr3 128948086 128948103 PAX9 JASPAR yes 71050634
chr3 128948087 128948101 PAX6 JASPAR yes 5647207
chr3 128948087 128948101 PAX6 JASPAR yes 71050635
chr3 128948087 128948106 PAX5 JASPAR yes 5647208
chr3 128948087 128948106 PAX5 JASPAR yes 71050636
chr3 128948110 128948122 TEAD1 JASPAR yes 5647209
chr3 128948110 128948122 TEAD1 JASPAR yes 71050637
chr3 128948114 128948126 HNF1B JASPAR yes 5647210
chr3 128948114 128948126 HNF1B JASPAR yes 71050638
chr3 128948144 128948148 NFE TRANSFAC yes 5647211
chr3 128948144 128948148 NFE TRANSFAC yes 71050639
chr3 128948175 128948190 SOX21 JASPAR yes 5647212
chr3 128948175 128948190 SOX21 JASPAR yes 71050640
chr3 128948175 128948191 SOX4 JASPAR yes 5647213
chr3 128948175 128948191 SOX4 JASPAR yes 71050641
chr3 128948208 128948229 MAFG JASPAR yes 5647214
chr3 128948208 128948229 MAFG JASPAR yes 71050642
chr3 128948209 128948223 JUN JASPAR yes 5647215
chr3 128948209 128948223 JUN JASPAR yes 71050643
chr3 128948212 128948223 FOSL2 JASPAR yes 5647216
chr3 128948212 128948223 JUNB JASPAR yes 5647217
chr3 128948212 128948223 FOSL2 JASPAR yes 71050644
chr3 128948212 128948223 JUNB JASPAR yes 71050645
chr3 128948213 128948224 FOS JASPAR yes 5647218
chr3 128948213 128948224 FOSL1 JASPAR yes 5647219
chr3 128948213 128948224 JUND JASPAR yes 5647220
chr3 128948213 128948224 FOS JASPAR yes 71050646
chr3 128948213 128948224 FOSL1 JASPAR yes 71050647
chr3 128948213 128948224 JUND JASPAR yes 71050648
chr3 128948213 128948231 MAFF JASPAR yes 5647221
chr3 128948213 128948231 MAFF JASPAR yes 71050649
chr3 128948214 128948221 JUN TRANSFAC yes 5647222
chr3 128948214 128948221 JUN TRANSFAC yes 71050650
chr3 128948214 128948225 NFE2L2 JASPAR yes 5647223
chr3 128948214 128948225 NFE2L2 JASPAR yes 71050651
chr3 128948275 128948278 MYB TRANSFAC yes 5647224
chr3 128948275 128948278 MYB TRANSFAC yes 71050652
chr3 128948278 128948288 HOXA13 JASPAR yes 5647225
chr3 128948278 128948288 HOXB13 JASPAR yes 5647226
chr3 128948278 128948288 HOXA13 JASPAR yes 71050653
chr3 128948278 128948288 HOXB13 JASPAR yes 71050654
chr3 128948279 128948290 FOXP2 JASPAR yes 5647227
chr3 128948279 128948290 FOXP2 JASPAR yes 71050655
chr3 128948280 128948284 TEAD2 TRANSFAC yes 5647228
chr3 128948280 128948284 TEAD2 TRANSFAC yes 71050656
chr3 128948280 128948285 TBP TRANSFAC yes 5647229
chr3 128948280 128948285 TBP TRANSFAC yes 71050657
chr3 128948286 128948291 MYC TRANSFAC yes 5647230
chr3 128948286 128948291 MYC TRANSFAC yes 71050658
chr3 128948295 128948300 GATA2 JASPAR yes 5647231
chr3 128948295 128948300 GATA2 JASPAR yes 71050659
chr3 128948312 128948325 POU2F2 JASPAR yes 5647232
chr3 128948312 128948325 POU2F2 JASPAR yes 71050660
chr3 128948315 128948324 POU3F4 JASPAR yes 5647233
chr3 128948315 128948324 POU5F1B JASPAR yes 5647234
chr3 128948315 128948324 POU3F4 JASPAR yes 71050661
chr3 128948315 128948324 POU5F1B JASPAR yes 71050662
chr3 128948327 128948332 SP1 TRANSFAC yes 5647235
chr3 128948327 128948332 SP1 TRANSFAC yes 71050663
chr3 128948328 128948343 TFAP2A JASPAR yes 5647236
chr3 128948328 128948343 TFAP2C JASPAR yes 5647237
chr3 128948328 128948343 TFAP2A JASPAR yes 71050664
chr3 128948328 128948343 TFAP2C JASPAR yes 71050665
chr3 128948379 128948400 IRF1 JASPAR yes 5647238
chr3 128948379 128948400 IRF1 JASPAR yes 71050666
chr3 128948381 128948396 STAT2 JASPAR yes 5647239
chr3 128948381 128948396 STAT2 JASPAR yes 71050667
chr3 128948383 128948398 IRF9 JASPAR yes 5647240
chr3 128948383 128948398 IRF9 JASPAR yes 71050668
chr3 128948389 128948400 FOXA1 JASPAR yes 5647241
chr3 128948389 128948400 FOXA1 JASPAR yes 71050669
chr3 128948421 128948426 ATF1 TRANSFAC yes 5647242
chr3 128948421 128948426 ATF1 TRANSFAC yes 71050670
chr3 128948430 128948441 NFE2L2 JASPAR yes 5647243
chr3 128948430 128948441 NFE2L2 JASPAR yes 71050671
chr3 128948435 128948439 ESR1 TRANSFAC yes 5647244
chr3 128948435 128948439 ESR1 TRANSFAC yes 71050672
SNP sites on vista42396[chr3:128947996-128948470]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 128947996 rs149655252 C T
CTCF MSC YY1
7024587
chr3 128948003 rs73862982 T C
CTCF MSC
7024588
chr3 128948232 rs7611332 T C no 7024589
chr3 128948350 rs7621679 A G no 7024590
chr3 128948371 rs551861391 C T no 7024591
Genes possibly regulated by vista42396[chr3:128947996-128948470]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 128806418 128879879 - ISY1-RAB43 ENSG00000261796.1 128879879 0.91 0.81 4063 31883
chr3 128846258 128880136 - ISY1 ENSG00000240682.5 128880136 0.67 0.98 4064 32140
chr3 128888327 128902765 - CNBP ENSG00000169714.12 128902765 0.59 1.0 4065 54769
chr3 128968449 128996614 + COPG1 ENSG00000181789.10 128968449 0.55 1.0 4066 80021
chr3 128997671 129025029 + HMCES ENSG00000183624.9 128997671 0.57 1.0 4067 50799
chr3 129033615 129035120 - H1FX ENSG00000184897.4 129035120 0.76 1.0 4068 13350
Expression level of Genes
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miRNAs possibly regulated by vista42396[chr3:128947996-128948470]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results