EnhancerDB
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  3. vista42399[chr3:128952340-128952748]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42399[chr3:128952340-128952748]
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Tissue distribution of vista42399
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Transcription factor that possibly regulate vista42399[chr3:128952340-128952748]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 128952403 128952775 SPI1 UCSC Txn Factor no Conserved 108530340
chr3 128952475 128952805 BHLHE40 UCSC Txn Factor no Conserved 108530341
chr3 128952480 128952833 EBF1 UCSC Txn Factor no Conserved 108530342
chr3 128952352 128952367 SCRT1 JASPAR yes 5647823
chr3 128952352 128952367 SCRT1 JASPAR yes 71050732
chr3 128952392 128952400 FEV JASPAR yes 5647824
chr3 128952392 128952400 FEV JASPAR yes 71050733
chr3 128952413 128952432 REST JASPAR yes 5647825
chr3 128952413 128952432 REST JASPAR yes 71050734
chr3 128952426 128952447 REST JASPAR yes 5647826
chr3 128952426 128952447 REST JASPAR yes 71050735
chr3 128952427 128952446 REST JASPAR yes 5647827
chr3 128952427 128952446 REST JASPAR yes 71050736
chr3 128952431 128952441 SP1 JASPAR yes 5647828
chr3 128952431 128952441 SP1 JASPAR yes 71050737
chr3 128952442 128952448 ZNF354C JASPAR yes 5647829
chr3 128952442 128952448 ZNF354C JASPAR yes 71050738
chr3 128952456 128952464 TBX15 JASPAR yes 5647830
chr3 128952456 128952464 TBX1 JASPAR yes 5647831
chr3 128952456 128952464 TBX4 JASPAR yes 5647832
chr3 128952456 128952464 TBX5 JASPAR yes 5647833
chr3 128952456 128952464 TBX15 JASPAR yes 71050739
chr3 128952456 128952464 TBX1 JASPAR yes 71050740
chr3 128952456 128952464 TBX4 JASPAR yes 71050741
chr3 128952456 128952464 TBX5 JASPAR yes 71050742
chr3 128952510 128952515 ETS2 TRANSFAC yes 5647834
chr3 128952510 128952515 ETS2 TRANSFAC yes 71050743
chr3 128952512 128952530 MAFF JASPAR yes 5647835
chr3 128952512 128952530 MAFF JASPAR yes 71050744
chr3 128952514 128952529 MAFK JASPAR yes 5647836
chr3 128952514 128952529 MAFK JASPAR yes 71050745
chr3 128952526 128952540 SPI1 JASPAR yes 5647837
chr3 128952526 128952540 SPIC JASPAR yes 5647838
chr3 128952526 128952540 SPI1 JASPAR yes 71050746
chr3 128952526 128952540 SPIC JASPAR yes 71050747
chr3 128952527 128952540 ELF1 JASPAR yes 5647839
chr3 128952527 128952540 ELF1 JASPAR yes 71050748
chr3 128952529 128952540 ELF5 JASPAR yes 5647840
chr3 128952529 128952540 ELF5 JASPAR yes 71050749
chr3 128952530 128952537 SPIB JASPAR yes 5647841
chr3 128952530 128952537 SPIB JASPAR yes 71050750
chr3 128952531 128952539 EHF JASPAR yes 5647842
chr3 128952531 128952539 EHF JASPAR yes 71050751
chr3 128952532 128952539 SPI1 JASPAR yes 5647843
chr3 128952532 128952539 SPI1 JASPAR yes 71050752
chr3 128952558 128952569 FOXA1 JASPAR yes 5647844
chr3 128952558 128952569 FOXA1 JASPAR yes 71050753
chr3 128952558 128952573 FOXA1 JASPAR yes 5647845
chr3 128952558 128952573 FOXA1 JASPAR yes 71050754
chr3 128952559 128952569 NFIA JASPAR yes 5647846
chr3 128952559 128952569 NFIA JASPAR yes 71050755
chr3 128952559 128952570 FOXC1 JASPAR yes 5647847
chr3 128952559 128952570 FOXC1 JASPAR yes 71050756
chr3 128952561 128952567 NFIC JASPAR yes 5647848
chr3 128952561 128952567 NFIC JASPAR yes 71050757
chr3 128952565 128952581 NFYA JASPAR yes 5647849
chr3 128952565 128952581 NFYA JASPAR yes 71050758
chr3 128952570 128952574 H1TF2 TRANSFAC yes 5647850
chr3 128952570 128952574 NFE TRANSFAC yes 5647851
chr3 128952570 128952574 SRF TRANSFAC yes 5647852
chr3 128952570 128952574 H1TF2 TRANSFAC yes 71050759
chr3 128952570 128952574 NFE TRANSFAC yes 71050760
chr3 128952570 128952574 SRF TRANSFAC yes 71050761
chr3 128952575 128952579 LFA1 TRANSFAC yes 5647853
chr3 128952575 128952579 LFA1 TRANSFAC yes 71050762
chr3 128952580 128952591 FLI1 JASPAR yes 5647854
chr3 128952580 128952591 FLI1 JASPAR yes 71050763
chr3 128952581 128952589 EHF JASPAR yes 5647855
chr3 128952581 128952589 EHF JASPAR yes 71050764
chr3 128952616 128952637 IRF1 JASPAR yes 5647856
chr3 128952616 128952637 IRF1 JASPAR yes 71050765
chr3 128952620 128952634 SPI1 JASPAR yes 5647857
chr3 128952620 128952634 SPIC JASPAR yes 5647858
chr3 128952620 128952634 SPI1 JASPAR yes 71050766
chr3 128952620 128952634 SPIC JASPAR yes 71050767
chr3 128952620 128952635 STAT2 JASPAR yes 5647859
chr3 128952620 128952635 STAT2 JASPAR yes 71050768
chr3 128952626 128952631 ETS2 TRANSFAC yes 5647860
chr3 128952626 128952631 ETS2 TRANSFAC yes 71050769
chr3 128952629 128952639 TBR1 JASPAR yes 5647861
chr3 128952629 128952639 TBR1 JASPAR yes 71050770
chr3 128952642 128952646 LFA1 TRANSFAC yes 5647862
chr3 128952642 128952646 LFA1 TRANSFAC yes 71050771
chr3 128952643 128952654 USF1 JASPAR yes 5647863
chr3 128952643 128952654 USF2 JASPAR yes 5647864
chr3 128952643 128952654 USF1 JASPAR yes 71050772
chr3 128952643 128952654 USF2 JASPAR yes 71050773
chr3 128952645 128952658 NR2F1 JASPAR yes 5647865
chr3 128952645 128952658 NR2F1 JASPAR yes 71050774
chr3 128952648 128952656 NR4A2 JASPAR yes 5647866
chr3 128952648 128952656 NR4A2 JASPAR yes 71050775
chr3 128952652 128952662 ELK1 JASPAR yes 5647867
chr3 128952652 128952662 ELK1 JASPAR yes 71050776
chr3 128952654 128952663 ELK4 JASPAR yes 5647868
chr3 128952654 128952663 ELK4 JASPAR yes 71050777
chr3 128952654 128952664 ELK1 JASPAR yes 5647869
chr3 128952654 128952664 ERG JASPAR yes 5647870
chr3 128952654 128952664 ETV5 JASPAR yes 5647871
chr3 128952654 128952664 FEV JASPAR yes 5647872
chr3 128952654 128952664 FLI1 JASPAR yes 5647873
chr3 128952654 128952664 ELK1 JASPAR yes 71050778
chr3 128952654 128952664 ERG JASPAR yes 71050779
chr3 128952654 128952664 ETV5 JASPAR yes 71050780
chr3 128952654 128952664 FEV JASPAR yes 71050781
chr3 128952654 128952664 FLI1 JASPAR yes 71050782
chr3 128952654 128952665 ELK4 JASPAR yes 5647874
chr3 128952654 128952665 ELK4 JASPAR yes 71050783
chr3 128952656 128952662 ETS1 JASPAR yes 5647875
chr3 128952656 128952662 SPI1 JASPAR yes 5647876
chr3 128952656 128952662 ETS1 JASPAR yes 71050784
chr3 128952656 128952662 SPI1 JASPAR yes 71050785
chr3 128952658 128952679 ZNF263 JASPAR yes 5647877
chr3 128952658 128952679 ZNF263 JASPAR yes 71050786
chr3 128952683 128952693 NEUROD2 JASPAR yes 5647878
chr3 128952683 128952693 NEUROD2 JASPAR yes 71050787
chr3 128952684 128952694 MAX JASPAR yes 5647879
chr3 128952684 128952694 MAX JASPAR yes 71050788
chr3 128952717 128952738 IRF1 JASPAR yes 5647880
chr3 128952717 128952738 IRF1 JASPAR yes 71050789
chr3 128952720 128952741 IRF1 JASPAR yes 5647881
chr3 128952720 128952741 IRF1 JASPAR yes 71050790
chr3 128952721 128952742 IRF1 JASPAR yes 5647882
chr3 128952721 128952742 IRF1 JASPAR yes 71050791
chr3 128952722 128952737 FOXP1 JASPAR yes 5647883
chr3 128952722 128952737 FOXP1 JASPAR yes 71050792
chr3 128952722 128952743 IRF1 JASPAR yes 5647884
chr3 128952722 128952743 IRF1 JASPAR yes 71050793
chr3 128952723 128952738 FOXP1 JASPAR yes 5647885
chr3 128952723 128952738 FOXP1 JASPAR yes 71050794
chr3 128952723 128952744 IRF1 JASPAR yes 5647886
chr3 128952723 128952744 IRF1 JASPAR yes 71050795
chr3 128952724 128952739 FOXP1 JASPAR yes 5647887
chr3 128952724 128952739 FOXP1 JASPAR yes 71050796
chr3 128952724 128952745 IRF1 JASPAR yes 5647888
chr3 128952724 128952745 IRF1 JASPAR yes 71050797
chr3 128952725 128952740 FOXP1 JASPAR yes 5647889
chr3 128952725 128952740 FOXP1 JASPAR yes 71050798
chr3 128952725 128952746 IRF1 JASPAR yes 5647890
chr3 128952725 128952746 IRF1 JASPAR yes 71050799
chr3 128952726 128952741 FOXP1 JASPAR yes 5647891
chr3 128952726 128952741 FOXP1 JASPAR yes 71050800
chr3 128952726 128952747 IRF1 JASPAR yes 5647892
chr3 128952726 128952747 IRF1 JASPAR yes 71050801
chr3 128952727 128952742 FOXP1 JASPAR yes 5647893
chr3 128952727 128952742 FOXP1 JASPAR yes 71050802
chr3 128952727 128952748 IRF1 JASPAR yes 5647894
chr3 128952727 128952748 IRF1 JASPAR yes 71050803
chr3 128952728 128952743 FOXP1 JASPAR yes 5647895
chr3 128952728 128952743 FOXP1 JASPAR yes 71050804
chr3 128952729 128952744 FOXP1 JASPAR yes 5647896
chr3 128952729 128952744 FOXP1 JASPAR yes 71050805
chr3 128952729 128952750 IRF1 JASPAR yes 5647897
chr3 128952729 128952750 IRF1 JASPAR yes 71050806
chr3 128952730 128952745 FOXP1 JASPAR yes 5647898
chr3 128952730 128952745 FOXP1 JASPAR yes 71050807
chr3 128952730 128952751 IRF1 JASPAR yes 5647899
chr3 128952730 128952751 ZNF263 JASPAR yes 5647900
chr3 128952730 128952751 IRF1 JASPAR yes 71050808
chr3 128952730 128952751 ZNF263 JASPAR yes 71050809
chr3 128952731 128952746 FOXP1 JASPAR yes 5647901
chr3 128952731 128952746 FOXP1 JASPAR yes 71050810
chr3 128952731 128952752 IRF1 JASPAR yes 5647902
chr3 128952731 128952752 IRF1 JASPAR yes 71050811
chr3 128952732 128952747 FOXP1 JASPAR yes 5647903
chr3 128952732 128952747 FOXP1 JASPAR yes 71050812
chr3 128952733 128952748 FOXP1 JASPAR yes 5647904
chr3 128952733 128952748 FOXP1 JASPAR yes 71050813
chr3 128952733 128952754 ZNF263 JASPAR yes 5647905
chr3 128952733 128952754 ZNF263 JASPAR yes 71050814
chr3 128952737 128952752 FOXP1 JASPAR yes 5647906
chr3 128952737 128952752 FOXP1 JASPAR yes 71050815
chr3 128952744 128952749 ETS2 TRANSFAC yes 5647907
chr3 128952744 128952749 ETS2 TRANSFAC yes 71050816
SNP sites on vista42399[chr3:128952340-128952748]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 128952385 rs117356728 C T no 7024642
chr3 128952386 rs145304887 G A no 7024643
chr3 128952444 rs73862826 T G
REST SPI1 ZNF354C
7024644
chr3 128952665 rs528690403 G A
BHLHE40 EBF1 ELK4 SPI1 ZNF263
7024645
chr3 128952723 rs56078828 CTTTTTT C
BHLHE40 EBF1 FOXP1 IRF1 SPI1
7024646
chr3 128952723 rs758217069 CTTTTTT C
BHLHE40 EBF1 FOXP1 IRF1 SPI1
7024647
chr3 128952723 rs796870379 CTTTTTT C
BHLHE40 EBF1 FOXP1 IRF1 SPI1
7024648
Genes possibly regulated by vista42399[chr3:128952340-128952748]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 128806418 128879879 - ISY1-RAB43 ENSG00000261796.1 128879879 0.91 0.81 4063 27539
chr3 128846258 128880136 - ISY1 ENSG00000240682.5 128880136 0.67 0.98 4064 27796
chr3 128888327 128902765 - CNBP ENSG00000169714.12 128902765 0.59 1.0 4065 50425
chr3 128968449 128996614 + COPG1 ENSG00000181789.10 128968449 0.55 1.0 4066 84299
chr3 128997671 129025029 + HMCES ENSG00000183624.9 128997671 0.57 1.0 4067 55077
chr3 129033615 129035120 - H1FX ENSG00000184897.4 129035120 0.76 1.0 4068 17628
Expression level of Genes
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miRNAs possibly regulated by vista42399[chr3:128952340-128952748]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results