EnhancerDB
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  3. vista42418[chr3:129335456-129335900]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42418[chr3:129335456-129335900]
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Tissue distribution of vista42418
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Transcription factor that possibly regulate vista42418[chr3:129335456-129335900]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 129335519 129335536 RARA JASPAR yes 5671175
chr3 129335519 129335536 RXRA JASPAR yes 5671176
chr3 129335519 129335536 RARA JASPAR yes 71051568
chr3 129335519 129335536 RXRA JASPAR yes 71051569
chr3 129335528 129335539 ESRRA JASPAR yes 5671177
chr3 129335528 129335539 ESRRB JASPAR yes 5671178
chr3 129335528 129335539 ESRRA JASPAR yes 71051570
chr3 129335528 129335539 ESRRB JASPAR yes 71051571
chr3 129335529 129335537 NR4A2 JASPAR yes 5671179
chr3 129335529 129335537 NR4A2 JASPAR yes 71051572
chr3 129335530 129335547 RARA JASPAR yes 5671180
chr3 129335530 129335547 RARA JASPAR yes 71051573
chr3 129335595 129335599 H4TF2 TRANSFAC yes 5671181
chr3 129335595 129335599 H4TF2 TRANSFAC yes 71051574
chr3 129335607 129335619 TFAP2A JASPAR yes 5671182
chr3 129335607 129335619 TFAP2A JASPAR yes 71051575
chr3 129335607 129335620 TFAP2A JASPAR yes 5671183
chr3 129335607 129335620 TFAP2B JASPAR yes 5671184
chr3 129335607 129335620 TFAP2C JASPAR yes 5671185
chr3 129335607 129335620 TFAP2A JASPAR yes 71051576
chr3 129335607 129335620 TFAP2B JASPAR yes 71051577
chr3 129335607 129335620 TFAP2C JASPAR yes 71051578
chr3 129335620 129335639 REST JASPAR yes 5671186
chr3 129335620 129335639 REST JASPAR yes 71051579
chr3 129335622 129335637 TFAP2C JASPAR yes 5671187
chr3 129335622 129335637 TFAP2C JASPAR yes 71051580
chr3 129335634 129335649 ESR2 JASPAR yes 5671188
chr3 129335634 129335649 ESR2 JASPAR yes 71051581
chr3 129335635 129335639 LFA1 TRANSFAC yes 5671189
chr3 129335635 129335639 LFA1 TRANSFAC yes 71051582
chr3 129335650 129335656 JUN TRANSFAC yes 5671190
chr3 129335650 129335656 JUN TRANSFAC yes 71051583
chr3 129335654 129335657 MYB TRANSFAC yes 5671191
chr3 129335654 129335657 MYB TRANSFAC yes 71051584
chr3 129335665 129335675 RELA JASPAR yes 5671192
chr3 129335665 129335675 RELA JASPAR yes 71051585
chr3 129335666 129335676 RELA JASPAR yes 5671193
chr3 129335666 129335676 RELA JASPAR yes 71051586
chr3 129335666 129335677 NFKB1 JASPAR yes 5671194
chr3 129335666 129335677 NFKB1 JASPAR yes 71051587
chr3 129335668 129335673 H4TF1 TRANSFAC yes 5671195
chr3 129335668 129335673 H4TF1 TRANSFAC yes 71051588
chr3 129335672 129335691 REST JASPAR yes 5671196
chr3 129335672 129335691 REST JASPAR yes 71051589
chr3 129335675 129335690 HNF4A JASPAR yes 5671197
chr3 129335675 129335690 HNF4A JASPAR yes 71051590
chr3 129335695 129335701 PEA3 TRANSFAC yes 5671198
chr3 129335695 129335701 PEA3 TRANSFAC yes 71051591
chr3 129335712 129335726 EBF1 JASPAR yes 5671199
chr3 129335712 129335726 EBF1 JASPAR yes 71051592
chr3 129335727 129335742 JUND JASPAR yes 5671200
chr3 129335727 129335742 JUND JASPAR yes 71051593
chr3 129335729 129335743 ATF7 JASPAR yes 5671201
chr3 129335729 129335743 BATF3 JASPAR yes 5671202
chr3 129335729 129335743 ATF7 JASPAR yes 71051594
chr3 129335729 129335743 BATF3 JASPAR yes 71051595
chr3 129335730 129335742 HLF JASPAR yes 5671203
chr3 129335730 129335742 JDP2 JASPAR yes 5671204
chr3 129335730 129335742 HLF JASPAR yes 71051596
chr3 129335730 129335742 JDP2 JASPAR yes 71051597
chr3 129335730 129335743 ATF4 JASPAR yes 5671205
chr3 129335730 129335743 ATF4 JASPAR yes 71051598
chr3 129335730 129335745 JUND JASPAR yes 5671206
chr3 129335730 129335745 JUND JASPAR yes 71051599
chr3 129335731 129335740 JUN TRANSFAC yes 5671207
chr3 129335731 129335740 JUN TRANSFAC yes 71051600
chr3 129335731 129335744 JUN JASPAR yes 5671208
chr3 129335731 129335744 JUN JASPAR yes 71051601
chr3 129335732 129335739 JUN TRANSFAC yes 5671209
chr3 129335732 129335739 JUN TRANSFAC yes 71051602
chr3 129335773 129335783 TFAP4 JASPAR yes 5671210
chr3 129335773 129335783 TFAP4 JASPAR yes 71051603
chr3 129335782 129335787 GATA1 TRANSFAC yes 5671211
chr3 129335782 129335787 GATA1 TRANSFAC yes 71051604
chr3 129335792 129335803 FOSL2 JASPAR yes 5671212
chr3 129335792 129335803 FOSL2 JASPAR yes 71051605
chr3 129335800 129335821 ZNF263 JASPAR yes 5671213
chr3 129335800 129335821 ZNF263 JASPAR yes 71051606
chr3 129335803 129335824 ZNF263 JASPAR yes 5671214
chr3 129335803 129335824 ZNF263 JASPAR yes 71051607
chr3 129335812 129335825 NFKB1 JASPAR yes 5671215
chr3 129335812 129335825 NFKB1 JASPAR yes 71051608
chr3 129335831 129335837 MZF1 JASPAR yes 5671216
chr3 129335831 129335837 MZF1 JASPAR yes 71051609
SNP sites on vista42418[chr3:129335456-129335900]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 129335526 rs145318093 C T
RARA RXRA
7027364
chr3 129335534 rs58842034 C T
ESRRA ESRRB NR4A2 RARA RXRA
7027365
chr3 129335615 rs114785780 G C
TFAP2A TFAP2B TFAP2C
7027366
chr3 129335654 rs147640201 G A
JUN MYB
7027367
chr3 129335758 rs563910189 G A no 7027368
chr3 129335835 rs116266125 C T
MZF1
7027369
Genes possibly regulated by vista42418[chr3:129335456-129335900]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 129247483 129254012 + RHO ENSG00000163914.4 129247483 0.85 1.0 4072 12027
chr3 129262057 129270310 + H1FOO ENSG00000178804.3 129262057 0.97 1.0 4073 26601
chr3 129274018 129325661 - PLXND1 ENSG00000004399.8 129325661 0.81 1.0 4074 90205
Expression level of Genes
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miRNAs possibly regulated by vista42418[chr3:129335456-129335900]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results