EnhancerDB
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  3. vista42427[chr3:129543558-129543741]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42427[chr3:129543558-129543741]
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Tissue distribution of vista42427
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Transcription factor that possibly regulate vista42427[chr3:129543558-129543741]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 129543556 129543565 HIC2 JASPAR yes 5692201
chr3 129543556 129543565 HIC2 JASPAR yes 71051908
chr3 129543569 129543583 SPI1 JASPAR yes 5692202
chr3 129543569 129543583 SPI1 JASPAR yes 71051909
chr3 129543591 129543595 TEAD2 TRANSFAC yes 5692203
chr3 129543591 129543595 TEAD2 TRANSFAC yes 71051910
chr3 129543613 129543621 TBX15 JASPAR yes 5692204
chr3 129543613 129543621 TBX1 JASPAR yes 5692205
chr3 129543613 129543621 TBX4 JASPAR yes 5692206
chr3 129543613 129543621 TBX5 JASPAR yes 5692207
chr3 129543613 129543621 TBX15 JASPAR yes 71051911
chr3 129543613 129543621 TBX1 JASPAR yes 71051912
chr3 129543613 129543621 TBX4 JASPAR yes 71051913
chr3 129543613 129543621 TBX5 JASPAR yes 71051914
chr3 129543613 129543626 SMAD2 JASPAR yes 5692208
chr3 129543613 129543626 SMAD2 JASPAR yes 71051915
chr3 129543623 129543638 IRF9 JASPAR yes 5692209
chr3 129543623 129543638 IRF9 JASPAR yes 71051916
chr3 129543624 129543638 IRF7 JASPAR yes 5692210
chr3 129543624 129543638 IRF7 JASPAR yes 71051917
chr3 129543635 129543645 BARHL2 JASPAR yes 5692211
chr3 129543635 129543645 BARHL2 JASPAR yes 71051918
chr3 129543646 129543651 ETS2 TRANSFAC yes 5692212
chr3 129543646 129543651 ETS2 TRANSFAC yes 71051919
chr3 129543651 129543657 TBP TRANSFAC yes 5692213
chr3 129543651 129543657 TBP TRANSFAC yes 71051920
chr3 129543653 129543668 SOX21 JASPAR yes 5692214
chr3 129543653 129543668 SOX21 JASPAR yes 71051921
chr3 129543672 129543687 STAT1 JASPAR yes 5692215
chr3 129543672 129543687 STAT1 JASPAR yes 71051922
chr3 129543680 129543694 STAT1 JASPAR yes 5692216
chr3 129543680 129543694 STAT1 JASPAR yes 71051923
chr3 129543680 129543695 STAT2 JASPAR yes 5692217
chr3 129543680 129543695 STAT2 JASPAR yes 71051924
chr3 129543683 129543693 NFATC3 JASPAR yes 5692218
chr3 129543683 129543693 NFATC3 JASPAR yes 71051925
chr3 129543685 129543692 NFATC2 JASPAR yes 5692219
chr3 129543685 129543692 NFATC2 JASPAR yes 71051926
chr3 129543692 129543696 YY1 TRANSFAC yes 5692220
chr3 129543692 129543696 YY1 TRANSFAC yes 71051927
chr3 129543736 129543751 SOX21 JASPAR yes 5692221
chr3 129543736 129543751 SOX21 JASPAR yes 71051928
chr3 129543741 129543744 MYB TRANSFAC yes 5692222
chr3 129543741 129543744 MYB TRANSFAC yes 71051929
SNP sites on vista42427[chr3:129543558-129543741]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 129543577 rs374289869 G A
SPI1
7028992
chr3 129543603 rs149165462 C T no 7028993
chr3 129543608 rs551273214 C G no 7028994
chr3 129543656 rs183520566 A C
SOX21 TBP
7028995
Genes possibly regulated by vista42427[chr3:129543558-129543741]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 129366635 129612419 - TMCC1 ENSG00000172765.12 129612419 0.7 1.0 4075 31322
Expression level of Genes
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miRNAs possibly regulated by vista42427[chr3:129543558-129543741]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results