EnhancerDB
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  3. vista42440[chr3:130637982-130638444]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42440[chr3:130637982-130638444]
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Tissue distribution of vista42440
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Transcription factor that possibly regulate vista42440[chr3:130637982-130638444]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 130637991 130637996 SP1 TRANSFAC yes 5722895
chr3 130637991 130637996 SP1 TRANSFAC yes 71052583
chr3 130638056 130638077 IRF1 JASPAR yes 5722896
chr3 130638056 130638077 IRF1 JASPAR yes 71052584
chr3 130638058 130638079 IRF1 JASPAR yes 5722897
chr3 130638058 130638079 IRF1 JASPAR yes 71052585
chr3 130638060 130638081 IRF1 JASPAR yes 5722898
chr3 130638060 130638081 IRF1 JASPAR yes 71052586
chr3 130638064 130638085 IRF1 JASPAR yes 5722899
chr3 130638064 130638085 IRF1 JASPAR yes 71052587
chr3 130638066 130638081 PRDM1 JASPAR yes 5722900
chr3 130638066 130638081 STAT2 JASPAR yes 5722901
chr3 130638066 130638081 PRDM1 JASPAR yes 71052588
chr3 130638066 130638081 STAT2 JASPAR yes 71052589
chr3 130638067 130638081 SPIC JASPAR yes 5722902
chr3 130638067 130638081 STAT1 JASPAR yes 5722903
chr3 130638067 130638081 SPIC JASPAR yes 71052590
chr3 130638067 130638081 STAT1 JASPAR yes 71052591
chr3 130638068 130638089 IRF1 JASPAR yes 5722904
chr3 130638068 130638089 IRF1 JASPAR yes 71052592
chr3 130638069 130638084 FOXP1 JASPAR yes 5722905
chr3 130638069 130638084 FOXP1 JASPAR yes 71052593
chr3 130638071 130638086 FOXP1 JASPAR yes 5722906
chr3 130638071 130638086 FOXP1 JASPAR yes 71052594
chr3 130638073 130638088 FOXP1 JASPAR yes 5722907
chr3 130638073 130638088 FOXP1 JASPAR yes 71052595
chr3 130638074 130638089 FOXP1 JASPAR yes 5722908
chr3 130638074 130638089 FOXP1 JASPAR yes 71052596
chr3 130638079 130638089 HOXB13 JASPAR yes 5722909
chr3 130638079 130638089 HOXD13 JASPAR yes 5722910
chr3 130638079 130638089 HOXB13 JASPAR yes 71052597
chr3 130638079 130638089 HOXD13 JASPAR yes 71052598
chr3 130638079 130638090 HOXA10 JASPAR yes 5722911
chr3 130638079 130638090 HOXA10 JASPAR yes 71052599
chr3 130638110 130638125 HNF4A JASPAR yes 5722912
chr3 130638110 130638125 HNF4A JASPAR yes 71052600
chr3 130638201 130638209 RHOXF1 JASPAR yes 5722913
chr3 130638201 130638209 RHOXF1 JASPAR yes 71052601
chr3 130638211 130638216 SP1 TRANSFAC yes 5722914
chr3 130638211 130638216 SP1 TRANSFAC yes 71052602
chr3 130638235 130638245 HOXA13 JASPAR yes 5722915
chr3 130638235 130638245 HOXA13 JASPAR yes 71052603
chr3 130638250 130638263 NFKB2 JASPAR yes 5722916
chr3 130638250 130638263 NFKB2 JASPAR yes 71052604
chr3 130638255 130638271 RFX5 JASPAR yes 5722917
chr3 130638255 130638271 RFX5 JASPAR yes 71052605
chr3 130638264 130638274 HMBOX1 JASPAR yes 5722918
chr3 130638264 130638274 HMBOX1 JASPAR yes 71052606
chr3 130638266 130638269 MYB TRANSFAC yes 5722919
chr3 130638266 130638269 MYB TRANSFAC yes 71052607
chr3 130638349 130638359 SP1 JASPAR yes 5722920
chr3 130638349 130638359 SP1 JASPAR yes 71052608
chr3 130638352 130638357 SP1 TRANSFAC yes 5722921
chr3 130638352 130638357 SP1 TRANSFAC yes 71052609
chr3 130638360 130638378 IRF2 JASPAR yes 5722922
chr3 130638360 130638378 IRF2 JASPAR yes 71052610
chr3 130638361 130638382 IRF1 JASPAR yes 5722923
chr3 130638361 130638382 IRF1 JASPAR yes 71052611
chr3 130638363 130638378 STAT2 JASPAR yes 5722924
chr3 130638363 130638378 STAT2 JASPAR yes 71052612
chr3 130638364 130638378 STAT1 JASPAR yes 5722925
chr3 130638364 130638378 STAT1 JASPAR yes 71052613
chr3 130638365 130638379 IRF8 JASPAR yes 5722926
chr3 130638365 130638379 IRF8 JASPAR yes 71052614
chr3 130638365 130638380 IRF9 JASPAR yes 5722927
chr3 130638365 130638380 IRF9 JASPAR yes 71052615
chr3 130638393 130638402 SOX9 JASPAR yes 5722928
chr3 130638393 130638402 SOX9 JASPAR yes 71052616
chr3 130638412 130638416 YY1 TRANSFAC yes 5722929
chr3 130638412 130638416 YY1 TRANSFAC yes 71052617
chr3 130638421 130638436 LEF1 JASPAR yes 5722930
chr3 130638421 130638436 LEF1 JASPAR yes 71052618
chr3 130638422 130638436 TCF7L2 JASPAR yes 5722931
chr3 130638422 130638436 TCF7L2 JASPAR yes 71052619
chr3 130638443 130638447 YY1 TRANSFAC yes 5722932
chr3 130638443 130638447 YY1 TRANSFAC yes 71052620
SNP sites on vista42440[chr3:130637982-130638444]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 130638074 rs852209 C T
FOXP1 IRF1 PRDM1 SPIC STAT1 STAT2
7032151
chr3 130638086 rs2685176 T C
FOXP1 HOXA10 HOXB13 HOXD13 IRF1
7032152
chr3 130638121 rs543495077 T G
HNF4A
7032153
chr3 130638254 rs115109875 G A
NFKB2
7032154
chr3 130638299 rs190221773 G T no 7032155
chr3 130638301 rs547971106 G A no 7032156
chr3 130638305 rs183683309 C T no 7032157
chr3 130638359 rs530629910 G A
SP1
7032158
Genes possibly regulated by vista42440[chr3:130637982-130638444]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 130569439 130735556 + ATP2C1 ENSG00000017260.15 130569439 0.75 0.99 4080 31457
Expression level of Genes
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miRNAs possibly regulated by vista42440[chr3:130637982-130638444]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results