EnhancerDB
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  3. vista42496[chr3:134067109-134067364]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42496[chr3:134067109-134067364]
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Tissue distribution of vista42496
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Transcription factor that possibly regulate vista42496[chr3:134067109-134067364]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 134067100 134067113 SMAD2 JASPAR yes 5875650
chr3 134067100 134067113 SMAD2 JASPAR yes 71054477
chr3 134067116 134067125 JDP2 JASPAR yes 5875651
chr3 134067116 134067125 JDP2 JASPAR yes 71054478
chr3 134067116 134067130 JUN JASPAR yes 5875652
chr3 134067116 134067130 JUN JASPAR yes 71054479
chr3 134067117 134067128 BATF JASPAR yes 5875653
chr3 134067117 134067128 BATF JASPAR yes 71054480
chr3 134067127 134067142 HNF4A JASPAR yes 5875654
chr3 134067127 134067142 HNF4A JASPAR yes 71054481
chr3 134067134 134067140 NFE2 TRANSFAC yes 5875655
chr3 134067134 134067140 NFE2 TRANSFAC yes 71054482
chr3 134067161 134067172 PHOX2A JASPAR yes 5875656
chr3 134067161 134067172 PROP1 JASPAR yes 5875657
chr3 134067161 134067172 PHOX2A JASPAR yes 71054483
chr3 134067161 134067172 PROP1 JASPAR yes 71054484
chr3 134067166 134067170 YY1 TRANSFAC yes 5875658
chr3 134067166 134067170 YY1 TRANSFAC yes 71054485
chr3 134067201 134067213 YY1 JASPAR yes 5875659
chr3 134067201 134067213 YY1 JASPAR yes 71054486
chr3 134067209 134067220 CDX2 JASPAR yes 5875660
chr3 134067209 134067220 CDX2 JASPAR yes 71054487
chr3 134067210 134067221 HOXA10 JASPAR yes 5875661
chr3 134067210 134067221 HOXA10 JASPAR yes 71054488
chr3 134067211 134067220 CDX1 JASPAR yes 5875662
chr3 134067211 134067220 CDX1 JASPAR yes 71054489
chr3 134067211 134067221 HOXA13 JASPAR yes 5875663
chr3 134067211 134067221 HOXB13 JASPAR yes 5875664
chr3 134067211 134067221 HOXD13 JASPAR yes 5875665
chr3 134067211 134067221 HOXA13 JASPAR yes 71054490
chr3 134067211 134067221 HOXB13 JASPAR yes 71054491
chr3 134067211 134067221 HOXD13 JASPAR yes 71054492
chr3 134067222 134067225 MYB TRANSFAC yes 5875666
chr3 134067222 134067225 MYB TRANSFAC yes 71054493
chr3 134067236 134067241 GATA1 TRANSFAC yes 5875667
chr3 134067236 134067241 GATA1 TRANSFAC yes 71054494
chr3 134067242 134067260 TP73 JASPAR yes 5875668
chr3 134067242 134067260 TP73 JASPAR yes 71054495
chr3 134067243 134067258 TP53 JASPAR yes 5875669
chr3 134067243 134067258 TP53 JASPAR yes 71054496
chr3 134067253 134067266 POU2F2 JASPAR yes 5875670
chr3 134067253 134067266 POU2F2 JASPAR yes 71054497
chr3 134067279 134067282 MYB TRANSFAC yes 5875671
chr3 134067279 134067282 MYB TRANSFAC yes 71054498
chr3 134067279 134067295 T JASPAR yes 5875672
chr3 134067279 134067295 T JASPAR yes 71054499
chr3 134067292 134067307 HNF1A JASPAR yes 5875673
chr3 134067292 134067307 HNF1A JASPAR yes 71054500
chr3 134067293 134067306 HNF1B JASPAR yes 5875674
chr3 134067293 134067306 HNF1B JASPAR yes 71054501
chr3 134067295 134067301 TBP TRANSFAC yes 5875675
chr3 134067295 134067301 TBP TRANSFAC yes 71054502
chr3 134067302 134067305 MYB TRANSFAC yes 5875676
chr3 134067302 134067305 MYB TRANSFAC yes 71054503
chr3 134067319 134067336 RARA JASPAR yes 5875677
chr3 134067319 134067336 RXRA JASPAR yes 5875678
chr3 134067319 134067336 RARA JASPAR yes 71054504
chr3 134067319 134067336 RXRA JASPAR yes 71054505
SNP sites on vista42496[chr3:134067109-134067364]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 134067137 rs148278033 G A
HNF4A NFE2
7046764
Genes possibly regulated by vista42496[chr3:134067109-134067364]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 133784147 133969689 - RYK ENSG00000163785.8 133969689 0.7 1.0 4101 2580
chr3 134074716 134094321 - AMOTL2 ENSG00000114019.10 134094321 0.73 0.99 4102 73043
Expression level of Genes
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miRNAs possibly regulated by vista42496[chr3:134067109-134067364]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr3 134086646 134086666 - hsa-miR-6827-3p MIMAT0027555 134093288 0.002259584083336525 0.0 0.0 1198
Expression level of miRNAs
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