EnhancerDB
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  3. vista42497[chr3:134068231-134068586]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista42497[chr3:134068231-134068586]
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Tissue distribution of vista42497
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Transcription factor that possibly regulate vista42497[chr3:134068231-134068586]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 134068228 134068242 TLX1 JASPAR yes 5875803
chr3 134068228 134068242 TLX1 JASPAR yes 71054506
chr3 134068229 134068243 TLX1 JASPAR yes 5875804
chr3 134068229 134068243 TLX1 JASPAR yes 71054507
chr3 134068295 134068301 TCF1 TRANSFAC yes 5875805
chr3 134068295 134068301 TCF1 TRANSFAC yes 71054508
chr3 134068295 134068302 TCF4 TRANSFAC yes 5875806
chr3 134068295 134068302 TCF4 TRANSFAC yes 71054509
chr3 134068321 134068336 FOXP1 JASPAR yes 5875807
chr3 134068321 134068336 FOXP1 JASPAR yes 71054510
chr3 134068322 134068333 FOXA1 JASPAR yes 5875808
chr3 134068322 134068333 FOXA1 JASPAR yes 71054511
chr3 134068326 134068335 SRY JASPAR yes 5875809
chr3 134068326 134068335 SRY JASPAR yes 71054512
chr3 134068328 134068344 SOX4 JASPAR yes 5875810
chr3 134068328 134068344 SOX4 JASPAR yes 71054513
chr3 134068329 134068344 SOX21 JASPAR yes 5875811
chr3 134068329 134068344 SOX21 JASPAR yes 71054514
chr3 134068329 134068345 SOX4 JASPAR yes 5875812
chr3 134068329 134068345 SOX4 JASPAR yes 71054515
chr3 134068337 134068341 YY1 TRANSFAC yes 5875813
chr3 134068337 134068341 YY1 TRANSFAC yes 71054516
chr3 134068338 134068348 HOXD13 JASPAR yes 5875814
chr3 134068338 134068348 HOXD13 JASPAR yes 71054517
chr3 134068338 134068349 HOXA10 JASPAR yes 5875815
chr3 134068338 134068349 HOXA10 JASPAR yes 71054518
chr3 134068340 134068352 MEF2A JASPAR yes 5875816
chr3 134068340 134068352 MEF2A JASPAR yes 71054519
chr3 134068369 134068379 RORA JASPAR yes 5875817
chr3 134068369 134068379 RORA JASPAR yes 71054520
chr3 134068379 134068388 SNAI2 JASPAR yes 5875818
chr3 134068379 134068388 SNAI2 JASPAR yes 71054521
chr3 134068379 134068389 FIGLA JASPAR yes 5875819
chr3 134068379 134068389 MSC JASPAR yes 5875820
chr3 134068379 134068389 SREBF2 JASPAR yes 5875821
chr3 134068379 134068389 TFAP4 JASPAR yes 5875822
chr3 134068379 134068389 FIGLA JASPAR yes 71054522
chr3 134068379 134068389 MSC JASPAR yes 71054523
chr3 134068379 134068389 SREBF2 JASPAR yes 71054524
chr3 134068379 134068389 TFAP4 JASPAR yes 71054525
chr3 134068397 134068408 HOXC13 JASPAR yes 5875823
chr3 134068397 134068408 HOXC13 JASPAR yes 71054526
chr3 134068410 134068423 HSF1 JASPAR yes 5875824
chr3 134068410 134068423 HSF4 JASPAR yes 5875825
chr3 134068410 134068423 HSF1 JASPAR yes 71054527
chr3 134068410 134068423 HSF4 JASPAR yes 71054528
chr3 134068435 134068447 TEAD1 JASPAR yes 5875826
chr3 134068435 134068447 TEAD1 JASPAR yes 71054529
chr3 134068437 134068447 TEAD1 JASPAR yes 5875827
chr3 134068437 134068447 TEAD4 JASPAR yes 5875828
chr3 134068437 134068447 TEAD1 JASPAR yes 71054530
chr3 134068437 134068447 TEAD4 JASPAR yes 71054531
chr3 134068441 134068458 ESR1 JASPAR yes 5875829
chr3 134068441 134068458 ESR1 JASPAR yes 71054532
chr3 134068445 134068448 MYB TRANSFAC yes 5875830
chr3 134068445 134068448 MYB TRANSFAC yes 71054533
chr3 134068464 134068475 GCM1 JASPAR yes 5875831
chr3 134068464 134068475 GCM1 JASPAR yes 71054534
chr3 134068470 134068475 SP1 TRANSFAC yes 5875832
chr3 134068470 134068475 SP1 TRANSFAC yes 71054535
chr3 134068473 134068493 RREB1 JASPAR yes 5875833
chr3 134068473 134068493 RREB1 JASPAR yes 71054536
chr3 134068477 134068487 SREBF2 JASPAR yes 5875834
chr3 134068477 134068487 SREBF2 JASPAR yes 71054537
chr3 134068486 134068498 ZBTB7B JASPAR yes 5875835
chr3 134068486 134068498 ZBTB7B JASPAR yes 71054538
chr3 134068491 134068496 SP1 TRANSFAC yes 5875836
chr3 134068491 134068496 SP1 TRANSFAC yes 71054539
chr3 134068492 134068502 REL JASPAR yes 5875837
chr3 134068492 134068502 REL JASPAR yes 71054540
chr3 134068492 134068503 NFKB1 JASPAR yes 5875838
chr3 134068492 134068503 NFKB1 JASPAR yes 71054541
chr3 134068498 134068503 ETS2 TRANSFAC yes 5875839
chr3 134068498 134068503 ETS2 TRANSFAC yes 71054542
chr3 134068503 134068515 PKNOX1 JASPAR yes 5875840
chr3 134068503 134068515 PKNOX2 JASPAR yes 5875841
chr3 134068503 134068515 TGIF1 JASPAR yes 5875842
chr3 134068503 134068515 TGIF2 JASPAR yes 5875843
chr3 134068503 134068515 PKNOX1 JASPAR yes 71054543
chr3 134068503 134068515 PKNOX2 JASPAR yes 71054544
chr3 134068503 134068515 TGIF1 JASPAR yes 71054545
chr3 134068503 134068515 TGIF2 JASPAR yes 71054546
chr3 134068504 134068513 SNAI2 JASPAR yes 5875844
chr3 134068504 134068513 SNAI2 JASPAR yes 71054547
chr3 134068504 134068514 ID4 JASPAR yes 5875845
chr3 134068504 134068514 MSC JASPAR yes 5875846
chr3 134068504 134068514 TCF3 JASPAR yes 5875847
chr3 134068504 134068514 ID4 JASPAR yes 71054548
chr3 134068504 134068514 MSC JASPAR yes 71054549
chr3 134068504 134068514 TCF3 JASPAR yes 71054550
chr3 134068512 134068526 GLIS3 JASPAR yes 5875848
chr3 134068512 134068526 GLIS3 JASPAR yes 71054551
chr3 134068524 134068545 ZNF263 JASPAR yes 5875849
chr3 134068524 134068545 ZNF263 JASPAR yes 71054552
chr3 134068531 134068542 FLI1 JASPAR yes 5875850
chr3 134068531 134068542 FLI1 JASPAR yes 71054553
chr3 134068532 134068545 ELF1 JASPAR yes 5875851
chr3 134068532 134068545 ELF1 JASPAR yes 71054554
chr3 134068538 134068544 NFE2 TRANSFAC yes 5875852
chr3 134068538 134068544 NFE2 TRANSFAC yes 71054555
chr3 134068545 134068559 RXRB JASPAR yes 5875853
chr3 134068545 134068559 RXRB JASPAR yes 71054556
chr3 134068545 134068560 NR2C2 JASPAR yes 5875854
chr3 134068545 134068560 NR2C2 JASPAR yes 71054557
chr3 134068556 134068571 ZIC3 JASPAR yes 5875855
chr3 134068556 134068571 ZIC4 JASPAR yes 5875856
chr3 134068556 134068571 ZIC3 JASPAR yes 71054558
chr3 134068556 134068571 ZIC4 JASPAR yes 71054559
chr3 134068557 134068571 ZIC1 JASPAR yes 5875857
chr3 134068557 134068571 ZIC1 JASPAR yes 71054560
chr3 134068574 134068579 MYC TRANSFAC yes 5875858
chr3 134068574 134068579 MYC TRANSFAC yes 71054561
SNP sites on vista42497[chr3:134068231-134068586]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 134068354 rs143372599 T A no 7046778
chr3 134068383 rs184697895 A C
FIGLA MSC SNAI2 SREBF2 TFAP4
7046779
chr3 134068462 rs4264700 C T no 7046780
chr3 134068489 rs369103270 T TG
RREB1 ZBTB7B
7046781
chr3 134068489 rs555377791 T TG
RREB1 ZBTB7B
7046782
chr3 134068542 rs6794885 C A
ELF1 FLI1 NFE2 ZNF263
7046783
chr3 134068564 rs112019934 G A
ZIC1 ZIC3 ZIC4
7046784
Genes possibly regulated by vista42497[chr3:134068231-134068586]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 133784147 133969689 - RYK ENSG00000163785.8 133969689 0.7 1.0 4101 1458
chr3 134074716 134094321 - AMOTL2 ENSG00000114019.10 134094321 0.73 0.99 4102 74265
Expression level of Genes
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miRNAs possibly regulated by vista42497[chr3:134068231-134068586]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr3 134086646 134086666 - hsa-miR-6827-3p MIMAT0027555 134093288 0.002365772484863066 0.0 0.0 1198
Expression level of miRNAs
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