EnhancerDB
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  3. vista4275[chr1:185615541-185615870]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista4275[chr1:185615541-185615870]
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Tissue distribution of vista4275
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Transcription factor that possibly regulate vista4275[chr1:185615541-185615870]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 185615258 185615959 TCF7L2 UCSC Txn Factor no Conserved 107852502
chr1 185615268 185615839 TCF12 UCSC Txn Factor no Conserved 107852506
chr1 185615296 185615810 EP300 UCSC Txn Factor no Conserved 107852512
chr1 185615309 185615779 GATA3 UCSC Txn Factor no Conserved 107852515
chr1 185615322 185615613 CEBPB UCSC Txn Factor no Conserved 107852520
chr1 185615351 185615732 TFAP2C UCSC Txn Factor no Conserved 107852529
chr1 185615369 185615714 TFAP2A UCSC Txn Factor no Conserved 107852534
chr1 185615432 185615703 FOXA1 UCSC Txn Factor no Conserved 107852558
chr1 185615462 185615702 FOXA2 UCSC Txn Factor no Conserved 107852565
chr1 185615471 185615760 TEAD4 UCSC Txn Factor no Conserved 107852569
chr1 185615538 185615547 THAP1 JASPAR yes 33830128
chr1 185615538 185615547 THAP1 JASPAR yes 118417853
chr1 185615552 185615565 SMAD2 JASPAR yes 33830129
chr1 185615552 185615565 SMAD2 JASPAR yes 118417854
chr1 185615570 185615576 SOX10 JASPAR yes 33830130
chr1 185615570 185615576 SOX10 JASPAR yes 118417855
chr1 185615571 185615582 FOXA1 JASPAR yes 33830131
chr1 185615571 185615582 FOXA1 JASPAR yes 118417856
chr1 185615571 185615586 FOXA1 JASPAR yes 33830132
chr1 185615571 185615586 FOXA1 JASPAR yes 118417857
chr1 185615580 185615590 TEAD4 JASPAR yes 33830133
chr1 185615580 185615590 TEAD4 JASPAR yes 118417858
chr1 185615581 185615596 HNF4G JASPAR yes 33830134
chr1 185615581 185615596 HNF4G JASPAR yes 118417859
chr1 185615589 185615593 H4TF2 TRANSFAC yes 33830135
chr1 185615589 185615593 H4TF2 TRANSFAC yes 118417860
chr1 185615589 185615603 EBF1 JASPAR yes 33830136
chr1 185615589 185615603 EBF1 JASPAR yes 118417861
chr1 185615597 185615607 EN2 JASPAR yes 33830137
chr1 185615597 185615607 ESX1 JASPAR yes 33830138
chr1 185615597 185615607 GBX1 JASPAR yes 33830139
chr1 185615597 185615607 GBX2 JASPAR yes 33830140
chr1 185615597 185615607 HESX1 JASPAR yes 33830141
chr1 185615597 185615607 HOXA2 JASPAR yes 33830142
chr1 185615597 185615607 LBX2 JASPAR yes 33830143
chr1 185615597 185615607 LHX2 JASPAR yes 33830144
chr1 185615597 185615607 RAX JASPAR yes 33830145
chr1 185615597 185615607 EN2 JASPAR yes 118417862
chr1 185615597 185615607 ESX1 JASPAR yes 118417863
chr1 185615597 185615607 GBX1 JASPAR yes 118417864
chr1 185615597 185615607 GBX2 JASPAR yes 118417865
chr1 185615597 185615607 HESX1 JASPAR yes 118417866
chr1 185615597 185615607 HOXA2 JASPAR yes 118417867
chr1 185615597 185615607 LBX2 JASPAR yes 118417868
chr1 185615597 185615607 LHX2 JASPAR yes 118417869
chr1 185615597 185615607 RAX JASPAR yes 118417870
chr1 185615598 185615606 BSX JASPAR yes 33830146
chr1 185615598 185615606 DLX6 JASPAR yes 33830147
chr1 185615598 185615606 MSX1 JASPAR yes 33830148
chr1 185615598 185615606 MSX2 JASPAR yes 33830149
chr1 185615598 185615606 BSX JASPAR yes 118417871
chr1 185615598 185615606 DLX6 JASPAR yes 118417872
chr1 185615598 185615606 MSX1 JASPAR yes 118417873
chr1 185615598 185615606 MSX2 JASPAR yes 118417874
chr1 185615617 185615629 TEAD1 JASPAR yes 33830150
chr1 185615617 185615629 TEAD1 JASPAR yes 118417875
chr1 185615642 185615648 SOX10 JASPAR yes 33830151
chr1 185615642 185615648 SOX10 JASPAR yes 118417876
chr1 185615663 185615666 MYB TRANSFAC yes 33830152
chr1 185615663 185615666 MYB TRANSFAC yes 118417877
chr1 185615671 185615682 FOXP2 JASPAR yes 33830153
chr1 185615671 185615682 FOXP2 JASPAR yes 118417878
chr1 185615673 185615681 FOXO3 JASPAR yes 33830154
chr1 185615673 185615681 FOXO3 JASPAR yes 118417879
chr1 185615675 185615694 CTCF JASPAR yes 33830155
chr1 185615675 185615694 CTCF JASPAR yes 118417880
chr1 185615703 185615714 TBX20 JASPAR yes 33830156
chr1 185615703 185615714 TBX20 JASPAR yes 118417881
chr1 185615722 185615737 HSF1 JASPAR yes 33830157
chr1 185615722 185615737 HSF1 JASPAR yes 118417882
chr1 185615726 185615734 OTX2 JASPAR yes 33830158
chr1 185615726 185615734 OTX2 JASPAR yes 118417883
chr1 185615732 185615747 LEF1 JASPAR yes 33830159
chr1 185615732 185615747 LEF1 JASPAR yes 118417884
chr1 185615733 185615738 ETS2 TRANSFAC yes 33830160
chr1 185615733 185615738 ETS2 TRANSFAC yes 118417885
chr1 185615733 185615747 TCF7L2 JASPAR yes 33830161
chr1 185615733 185615747 TCF7L2 JASPAR yes 118417886
chr1 185615751 185615754 MYB TRANSFAC yes 33830162
chr1 185615751 185615754 MYB TRANSFAC yes 118417887
chr1 185615763 185615775 E2F8 JASPAR yes 33830163
chr1 185615763 185615775 E2F8 JASPAR yes 118417888
chr1 185615767 185615773 MZF1 JASPAR yes 33830164
chr1 185615767 185615773 MZF1 JASPAR yes 118417889
chr1 185615775 185615779 YY1 TRANSFAC yes 33830165
chr1 185615775 185615779 YY1 TRANSFAC yes 118417890
chr1 185615782 185615785 MYB TRANSFAC yes 33830166
chr1 185615782 185615785 MYB TRANSFAC yes 118417891
chr1 185615789 185615807 RARA JASPAR yes 33830167
chr1 185615789 185615807 RARA JASPAR yes 118417892
chr1 185615797 185615804 NFATC2 JASPAR yes 33830168
chr1 185615797 185615804 NFATC2 JASPAR yes 118417893
chr1 185615801 185615812 FLI1 JASPAR yes 33830169
chr1 185615801 185615812 FLI1 JASPAR yes 118417894
chr1 185615802 185615812 GABPA JASPAR yes 33830170
chr1 185615802 185615812 GABPA JASPAR yes 118417895
chr1 185615802 185615815 ELF1 JASPAR yes 33830171
chr1 185615802 185615815 ELF1 JASPAR yes 118417896
chr1 185615803 185615810 SPI1 JASPAR yes 33830172
chr1 185615803 185615810 SPI1 JASPAR yes 118417897
chr1 185615803 185615811 FEV JASPAR yes 33830173
chr1 185615803 185615811 FEV JASPAR yes 118417898
chr1 185615805 185615810 ETS2 TRANSFAC yes 33830174
chr1 185615805 185615810 ETS2 TRANSFAC yes 118417899
chr1 185615805 185615819 TCF7L2 JASPAR yes 33830175
chr1 185615805 185615819 TCF7L2 JASPAR yes 118417900
chr1 185615805 185615820 PRDM1 JASPAR yes 33830176
chr1 185615805 185615820 PRDM1 JASPAR yes 118417901
chr1 185615807 185615819 IRF1 JASPAR yes 33830177
chr1 185615807 185615819 IRF1 JASPAR yes 118417902
chr1 185615812 185615816 YY1 TRANSFAC yes 33830178
chr1 185615812 185615816 YY1 TRANSFAC yes 118417903
chr1 185615841 185615846 ETS2 TRANSFAC yes 33830179
chr1 185615841 185615846 ETS2 TRANSFAC yes 118417904
chr1 185615850 185615868 TP63 JASPAR yes 33830180
chr1 185615850 185615868 TP73 JASPAR yes 33830181
chr1 185615850 185615868 TP63 JASPAR yes 118417905
chr1 185615850 185615868 TP73 JASPAR yes 118417906
chr1 185615859 185615862 MYB TRANSFAC yes 33830182
chr1 185615859 185615862 MYB TRANSFAC yes 118417907
chr1 185615869 185615884 MEF2C JASPAR yes 33830183
chr1 185615869 185615884 MEF2C JASPAR yes 118417908
SNP sites on vista4275[chr1:185615541-185615870]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 185615577 rs77481342 C T
CEBPB EP300 FOXA1 FOXA2 GATA3 TCF12 TCF7L2 TEAD4 TFAP2A TFAP2C
794954
chr1 185615594 rs143297229 C T
CEBPB EBF1 EP300 FOXA1 FOXA2 GATA3 HNF4G TCF12 TCF7L2 TEAD4 TFAP2A TFAP2C
794955
chr1 185615605 rs562974867 G A
BSX CEBPB DLX6 EN2 EP300 ESX1 FOXA1 FOXA2 GATA3 GBX1 GBX2 HESX1 HOXA2 LBX2 LHX2 MSX1 MSX2 RAX TCF12 TCF7L2 TEAD4 TFAP2A TFAP2C
794956
chr1 185615778 rs117244462 T C
EP300 GATA3 TCF12 TCF7L2 YY1
794957
chr1 185615788 rs146838073 G A
EP300 TCF12 TCF7L2
794958
Genes possibly regulated by vista4275[chr1:185615541-185615870]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 185703683 186160085 + HMCN1 ENSG00000143341.7 185703683 0.94 0.93 1654 12187
Expression level of Genes
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miRNAs possibly regulated by vista4275[chr1:185615541-185615870]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results