EnhancerDB
  1. Home
  2. Enhancers
  3. vista43500[chr3:187004502-187004623]
View enhancers around input chromosomal region
Back to top

Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista43500[chr3:187004502-187004623]
Back to top
Tissue distribution of vista43500
Back to top
Transcription factor that possibly regulate vista43500[chr3:187004502-187004623]
Back to top
Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr3 187004346 187004636 CEBPB UCSC Txn Factor no Conserved 108531304
chr3 187004358 187004646 JUND UCSC Txn Factor no Conserved 108531305
chr3 187004489 187004502 ATF4 JASPAR yes 8390308
chr3 187004489 187004502 ATF4 JASPAR yes 71101407
chr3 187004500 187004503 MYB TRANSFAC yes 8390313
chr3 187004500 187004503 MYB TRANSFAC yes 71101408
chr3 187004507 187004521 JUN JASPAR yes 8390314
chr3 187004507 187004521 JUN JASPAR yes 71101409
chr3 187004509 187004520 BATF JASPAR yes 8390315
chr3 187004509 187004520 BATF JASPAR yes 71101410
chr3 187004510 187004521 FOSL2 JASPAR yes 8390316
chr3 187004510 187004521 JUNB JASPAR yes 8390317
chr3 187004510 187004521 FOSL2 JASPAR yes 71101411
chr3 187004510 187004521 JUNB JASPAR yes 71101412
chr3 187004511 187004522 FOSL1 JASPAR yes 8390318
chr3 187004511 187004522 FOSL1 JASPAR yes 71101413
chr3 187004524 187004528 ESR1 TRANSFAC yes 8390319
chr3 187004524 187004528 ESR1 TRANSFAC yes 71101414
chr3 187004536 187004554 NR3C1 JASPAR yes 8390320
chr3 187004536 187004554 NR3C1 JASPAR yes 71101415
chr3 187004539 187004543 ESR1 TRANSFAC yes 8390321
chr3 187004539 187004543 ESR1 TRANSFAC yes 71101416
chr3 187004539 187004554 AR JASPAR yes 8390322
chr3 187004539 187004554 AR JASPAR yes 71101417
chr3 187004549 187004557 FOXC1 JASPAR yes 8390323
chr3 187004549 187004557 FOXC1 JASPAR yes 71101418
chr3 187004568 187004572 NFE TRANSFAC yes 8390324
chr3 187004568 187004572 NFE TRANSFAC yes 71101419
chr3 187004568 187004581 SMAD2 JASPAR yes 8390325
chr3 187004568 187004581 SMAD2 JASPAR yes 71101420
chr3 187004573 187004576 MYB TRANSFAC yes 8390326
chr3 187004573 187004576 MYB TRANSFAC yes 71101421
chr3 187004595 187004599 H4TF2 TRANSFAC yes 8390327
chr3 187004595 187004599 H4TF2 TRANSFAC yes 71101422
chr3 187004600 187004611 ESRRB JASPAR yes 8390328
chr3 187004600 187004611 ESRRB JASPAR yes 71101423
chr3 187004602 187004605 MYB TRANSFAC yes 8390329
chr3 187004602 187004605 MYB TRANSFAC yes 71101424
chr3 187004602 187004610 SF1 TRANSFAC yes 8390330
chr3 187004602 187004610 SF1 TRANSFAC yes 71101425
chr3 187004613 187004621 BSX JASPAR yes 8390331
chr3 187004613 187004621 BSX JASPAR yes 71101426
chr3 187004614 187004634 TP63 JASPAR yes 8390332
chr3 187004614 187004634 TP63 JASPAR yes 71101427
SNP sites on vista43500[chr3:187004502-187004623]
Back to top
chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr3 187004581 rs16861878 C A
CEBPB JUND SMAD2
7266452
Genes possibly regulated by vista43500[chr3:187004502-187004623]
Back to top
Details of Genes
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr3 186915274 186919253 + RTP1 ENSG00000175077.5 186915274 0.95 1.0 4363 10772
chr3 186935942 187009810 - MASP1 ENSG00000127241.12 187009810 0.92 0.95 4364 94813
chr3 187086120 187089864 + RTP4 ENSG00000136514.2 187086120 0.8 0.82 4365 18503
Expression level of Genes
Back to top
miRNAs possibly regulated by vista43500[chr3:187004502-187004623]
Back to top
Details of miRNAs
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
Back to top
No results