EnhancerDB
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  3. vista43887[chr4:1339592-1340250]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista43887[chr4:1339592-1340250]
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Tissue distribution of vista43887
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Transcription factor that possibly regulate vista43887[chr4:1339592-1340250]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr4 1339628 1341678 POLR2A UCSC Txn Factor no Conserved 108531832
chr4 1339676 1340100 CTCF UCSC Txn Factor no Conserved 108531833
chr4 1340053 1340739 PHF8 UCSC Txn Factor no Conserved 108531834
chr4 1339593 1339598 GATA2 JASPAR yes 49189009
chr4 1339607 1339613 TCF4 TRANSFAC yes 49189010
chr4 1339636 1339649 POU3F3 JASPAR yes 49189011
chr4 1339636 1339650 POU1F1 JASPAR yes 49189012
chr4 1339637 1339649 POU3F1 JASPAR yes 49189013
chr4 1339637 1339649 POU3F2 JASPAR yes 49189014
chr4 1339656 1339659 MYB TRANSFAC yes 49189015
chr4 1339691 1339706 HSF1 JASPAR yes 49189016
chr4 1339692 1339705 HSF4 JASPAR yes 49189017
chr4 1339708 1339725 BCL6B JASPAR yes 49189018
chr4 1339714 1339720 PEA3 TRANSFAC yes 49189019
chr4 1339734 1339739 NFY TRANSFAC yes 49189020
chr4 1339744 1339759 NR2C2 JASPAR yes 49189021
chr4 1339747 1339751 LFA1 TRANSFAC yes 49189022
chr4 1339753 1339767 PLAG1 JASPAR yes 49189023
chr4 1339761 1339769 SP1 TRANSFAC yes 49189024
chr4 1339761 1339771 SP1 JASPAR yes 49189025
chr4 1339763 1339769 MAZ TRANSFAC yes 49189026
chr4 1339782 1339801 PAX5 JASPAR yes 49189027
chr4 1339791 1339812 ZNF263 JASPAR yes 49189028
chr4 1339797 1339818 ZNF263 JASPAR yes 49189029
chr4 1339798 1339808 SP1 JASPAR yes 49189030
chr4 1339798 1339819 ZNF263 JASPAR yes 49189031
chr4 1339804 1339821 RARA JASPAR yes 49189032
chr4 1339804 1339821 RXRA JASPAR yes 49189033
chr4 1339804 1339825 ZNF263 JASPAR yes 49189034
chr4 1339808 1339816 EHF JASPAR yes 49189035
chr4 1339808 1339818 SP1 JASPAR yes 49189036
chr4 1339820 1339825 SP1 TRANSFAC yes 49189037
chr4 1339842 1339856 TLX1 JASPAR yes 49189038
chr4 1339857 1339870 SMAD2 JASPAR yes 49189039
chr4 1339869 1339890 REST JASPAR yes 49189040
chr4 1339872 1339877 SP1 TRANSFAC yes 49189041
chr4 1339904 1339913 SP1 TRANSFAC yes 49189042
chr4 1339905 1339910 SP1 TRANSFAC yes 49189043
chr4 1339920 1339941 ZNF263 JASPAR yes 49189044
chr4 1339931 1339936 ETS2 TRANSFAC yes 49189045
chr4 1339944 1339955 PHOX2A JASPAR yes 49189046
chr4 1339961 1339965 TEAD2 TRANSFAC yes 49189047
chr4 1339963 1339966 MYB TRANSFAC yes 49189048
chr4 1340003 1340006 MYB TRANSFAC yes 49189049
chr4 1340017 1340029 ZBTB7C JASPAR yes 49189050
chr4 1340020 1340032 ZBTB7C JASPAR yes 49189051
chr4 1340025 1340030 MYC TRANSFAC yes 49189052
chr4 1340030 1340050 TP53 JASPAR yes 49189053
chr4 1340034 1340045 ESRRA JASPAR yes 49189054
chr4 1340038 1340042 LFA1 TRANSFAC yes 49189055
chr4 1340042 1340047 SP1 TRANSFAC yes 49189056
chr4 1340045 1340055 SP1 JASPAR yes 49189057
chr4 1340047 1340061 E2F7 JASPAR yes 49189058
chr4 1340053 1340068 IRF9 JASPAR yes 49189059
chr4 1340054 1340068 IRF7 JASPAR yes 49189060
chr4 1340054 1340068 IRF8 JASPAR yes 49189061
chr4 1340055 1340069 STAT1 JASPAR yes 49189062
chr4 1340055 1340070 STAT2 JASPAR yes 49189063
chr4 1340074 1340085 TFAP2A JASPAR yes 49189064
chr4 1340074 1340085 TFAP2B JASPAR yes 49189065
chr4 1340087 1340093 SP1 TRANSFAC yes 49189066
chr4 1340089 1340094 SP1 TRANSFAC yes 49189067
chr4 1340098 1340108 SP1 JASPAR yes 49189068
chr4 1340099 1340107 SP1 TRANSFAC yes 49189069
chr4 1340164 1340168 H4TF2 TRANSFAC yes 49189070
chr4 1340214 1340218 H4TF2 TRANSFAC yes 49189071
SNP sites on vista43887[chr4:1339592-1340250]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr4 1339655 rs559491942 A G
POLR2A
7345914
chr4 1339697 rs534966985 C CTGCTGGATG
CTCF HSF1 HSF4 POLR2A
7345915
chr4 1339742 rs192091002 T C
CTCF POLR2A
7345916
chr4 1339774 rs59391666 G A
CTCF POLR2A
7345917
chr4 1339834 rs150435733 G A
CTCF POLR2A
7345918
chr4 1339835 rs145271312 C A
CTCF POLR2A
7345919
chr4 1339875 rs7671242 G A
CTCF POLR2A REST SP1
7345920
chr4 1339888 rs149160773 A T
CTCF POLR2A REST
7345921
chr4 1339926 rs548621676 CTTCTT C
CTCF POLR2A ZNF263
7345922
chr4 1340082 rs143259196 G A
CTCF PHF8 POLR2A TFAP2A TFAP2B
7345923
chr4 1340144 rs540926114 T G
PHF8 POLR2A
7345924
chr4 1340224 rs559340647 G A
PHF8 POLR2A
7345925
Genes possibly regulated by vista43887[chr4:1339592-1340250]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr4 1205236 1243741 - CTBP1 ENSG00000159692.11 1243741 0.69 1.0 4453 4149
chr4 1283639 1333935 + MAEA ENSG00000090316.11 1283639 0.63 1.0 4454 44047
chr4 1341054 1381837 + UVSSA ENSG00000163945.11 1341054 0.69 1.0 4455 99196
chr4 1385340 1389780 + CRIPAK ENSG00000179979.7 1385340 0.71 1.0 4456 54910
chr4 1396720 1400119 - NKX1-1 ENSG00000235608.1 1400119 1.0 0.0 4457 40131
Expression level of Genes
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miRNAs possibly regulated by vista43887[chr4:1339592-1340250]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results