EnhancerDB
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  3. vista43889[chr4:1562061-1562319]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista43889[chr4:1562061-1562319]
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Tissue distribution of vista43889
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Transcription factor that possibly regulate vista43889[chr4:1562061-1562319]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr4 1562069 1562287 FOXP2 UCSC Txn Factor no Conserved 108531836
chr4 1562077 1562083 ATF1 TRANSFAC yes 49189100
chr4 1562077 1562083 ATF1 TRANSFAC yes 87815037
chr4 1562103 1562122 PAX5 JASPAR yes 49189101
chr4 1562103 1562122 PAX5 JASPAR yes 87815038
chr4 1562105 1562117 NHLH1 JASPAR yes 49189102
chr4 1562105 1562117 NHLH1 JASPAR yes 87815039
chr4 1562106 1562116 NHLH1 JASPAR yes 49189103
chr4 1562106 1562116 TFAP4 JASPAR yes 49189104
chr4 1562106 1562116 NHLH1 JASPAR yes 87815040
chr4 1562106 1562116 TFAP4 JASPAR yes 87815041
chr4 1562130 1562134 YY1 TRANSFAC yes 49189105
chr4 1562130 1562134 YY1 TRANSFAC yes 87815042
chr4 1562132 1562143 HOXA10 JASPAR yes 49189106
chr4 1562132 1562143 HOXA10 JASPAR yes 87815043
chr4 1562133 1562143 ALX3 JASPAR yes 49189107
chr4 1562133 1562143 GSX2 JASPAR yes 49189108
chr4 1562133 1562143 HOXB2 JASPAR yes 49189109
chr4 1562133 1562143 MNX1 JASPAR yes 49189110
chr4 1562133 1562143 ALX3 JASPAR yes 87815044
chr4 1562133 1562143 GSX2 JASPAR yes 87815045
chr4 1562133 1562143 HOXB2 JASPAR yes 87815046
chr4 1562133 1562143 MNX1 JASPAR yes 87815047
chr4 1562134 1562142 LMX1A JASPAR yes 49189111
chr4 1562134 1562142 LMX1B JASPAR yes 49189112
chr4 1562134 1562142 NKX6-1 JASPAR yes 49189113
chr4 1562134 1562142 NKX6-2 JASPAR yes 49189114
chr4 1562134 1562142 VAX1 JASPAR yes 49189115
chr4 1562134 1562142 VAX2 JASPAR yes 49189116
chr4 1562134 1562142 VSX1 JASPAR yes 49189117
chr4 1562134 1562142 VSX2 JASPAR yes 49189118
chr4 1562134 1562142 LMX1A JASPAR yes 87815048
chr4 1562134 1562142 LMX1B JASPAR yes 87815049
chr4 1562134 1562142 NKX6-1 JASPAR yes 87815050
chr4 1562134 1562142 NKX6-2 JASPAR yes 87815051
chr4 1562134 1562142 VAX1 JASPAR yes 87815052
chr4 1562134 1562142 VAX2 JASPAR yes 87815053
chr4 1562134 1562142 VSX1 JASPAR yes 87815054
chr4 1562134 1562142 VSX2 JASPAR yes 87815055
chr4 1562144 1562149 GATA2 JASPAR yes 49189119
chr4 1562144 1562149 GATA2 JASPAR yes 87815056
chr4 1562145 1562151 ZNF354C JASPAR yes 49189120
chr4 1562145 1562151 ZNF354C JASPAR yes 87815057
chr4 1562156 1562167 NFE2 JASPAR yes 49189121
chr4 1562156 1562167 NFE2 JASPAR yes 87815058
chr4 1562158 1562164 ATF1 TRANSFAC yes 49189122
chr4 1562158 1562164 ATF1 TRANSFAC yes 87815059
chr4 1562158 1562165 XBP1 TRANSFAC yes 49189123
chr4 1562158 1562165 XBP1 TRANSFAC yes 87815060
chr4 1562163 1562167 YY1 TRANSFAC yes 49189124
chr4 1562163 1562167 YY1 TRANSFAC yes 87815061
chr4 1562175 1562187 INSM1 JASPAR yes 49189125
chr4 1562175 1562187 INSM1 JASPAR yes 87815062
chr4 1562196 1562210 ZIC1 JASPAR yes 49189126
chr4 1562196 1562210 ZIC1 JASPAR yes 87815063
chr4 1562196 1562211 ZIC3 JASPAR yes 49189127
chr4 1562196 1562211 ZIC4 JASPAR yes 49189128
chr4 1562196 1562211 ZIC3 JASPAR yes 87815064
chr4 1562196 1562211 ZIC4 JASPAR yes 87815065
chr4 1562214 1562225 PROP1 JASPAR yes 49189129
chr4 1562214 1562225 PROP1 JASPAR yes 87815066
chr4 1562265 1562279 ZIC1 JASPAR yes 49189130
chr4 1562265 1562279 ZIC1 JASPAR yes 87815067
chr4 1562265 1562280 ZIC4 JASPAR yes 49189131
chr4 1562265 1562280 ZIC4 JASPAR yes 87815068
chr4 1562280 1562285 TFAP2A TRANSFAC yes 49189132
chr4 1562280 1562285 TFAP2A TRANSFAC yes 87815069
chr4 1562280 1562286 MZF1 JASPAR yes 49189133
chr4 1562280 1562286 MZF1 JASPAR yes 87815070
chr4 1562298 1562319 IRF1 JASPAR yes 49189134
chr4 1562298 1562319 IRF1 JASPAR yes 87815071
chr4 1562299 1562305 PEA3 TRANSFAC yes 49189135
chr4 1562299 1562305 PEA3 TRANSFAC yes 87815072
chr4 1562301 1562315 IRF7 JASPAR yes 49189136
chr4 1562301 1562315 IRF7 JASPAR yes 87815073
chr4 1562302 1562316 STAT1 JASPAR yes 49189137
chr4 1562302 1562316 STAT1 JASPAR yes 87815074
chr4 1562302 1562317 STAT2 JASPAR yes 49189138
chr4 1562302 1562317 STAT2 JASPAR yes 87815075
chr4 1562303 1562318 STAT2 JASPAR yes 49189139
chr4 1562303 1562318 STAT2 JASPAR yes 87815076
chr4 1562304 1562319 FOXP1 JASPAR yes 49189140
chr4 1562304 1562319 FOXP1 JASPAR yes 87815077
chr4 1562305 1562316 FOXA1 JASPAR yes 49189141
chr4 1562305 1562316 FOXA1 JASPAR yes 87815078
chr4 1562307 1562318 FOXP2 JASPAR yes 49189142
chr4 1562307 1562318 FOXP2 JASPAR yes 87815079
chr4 1562310 1562322 TAL1 JASPAR yes 49189143
chr4 1562310 1562322 TAL1 JASPAR yes 87815080
chr4 1562311 1562323 PKNOX1 JASPAR yes 49189144
chr4 1562311 1562323 PKNOX2 JASPAR yes 49189145
chr4 1562311 1562323 TGIF1 JASPAR yes 49189146
chr4 1562311 1562323 TGIF2 JASPAR yes 49189147
chr4 1562311 1562323 PKNOX1 JASPAR yes 87815081
chr4 1562311 1562323 PKNOX2 JASPAR yes 87815082
chr4 1562311 1562323 TGIF1 JASPAR yes 87815083
chr4 1562311 1562323 TGIF2 JASPAR yes 87815084
chr4 1562312 1562322 MYF6 JASPAR yes 49189148
chr4 1562312 1562322 NEUROG2 JASPAR yes 49189149
chr4 1562312 1562322 MYF6 JASPAR yes 87815085
chr4 1562312 1562322 NEUROG2 JASPAR yes 87815086
chr4 1562312 1562324 TAL1 JASPAR yes 49189150
chr4 1562312 1562324 TAL1 JASPAR yes 87815087
chr4 1562312 1562332 ESR1 JASPAR yes 49189151
chr4 1562312 1562332 ESR1 JASPAR yes 87815088
chr4 1562315 1562333 ESR2 JASPAR yes 49189152
chr4 1562315 1562333 ESR2 JASPAR yes 87815089
chr4 1562316 1562333 ESR1 JASPAR yes 49189153
chr4 1562316 1562333 ESR1 JASPAR yes 87815090
chr4 1562316 1562334 ESR2 JASPAR yes 49189154
chr4 1562316 1562334 ESR2 JASPAR yes 87815091
chr4 1562317 1562332 ESR2 JASPAR yes 49189155
chr4 1562317 1562332 ESR2 JASPAR yes 87815092
chr4 1562317 1562337 ESR1 JASPAR yes 49189156
chr4 1562317 1562337 ESR1 JASPAR yes 87815093
SNP sites on vista43889[chr4:1562061-1562319]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr4 1562073 rs143374885 C T
FOXP2
7347384
chr4 1562092 rs7661676 G A
FOXP2
7347385
chr4 1562162 rs562660721 G A
ATF1 FOXP2 NFE2 XBP1
7347386
chr4 1562216 rs114509020 A G
FOXP2 PROP1
7347387
chr4 1562228 rs547985360 C A,T
FOXP2
7347388
chr4 1562231 rs115394192 A G
FOXP2
7347389
chr4 1562248 rs527425563 C G
FOXP2
7347390
Genes possibly regulated by vista43889[chr4:1562061-1562319]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
Expression level of Genes
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No results
miRNAs possibly regulated by vista43889[chr4:1562061-1562319]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results