EnhancerDB
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  3. vista43927[chr4:2538945-2539718]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista43927[chr4:2538945-2539718]
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Tissue distribution of vista43927
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Transcription factor that possibly regulate vista43927[chr4:2538945-2539718]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr4 2536980 2539612 POLR2A UCSC Txn Factor no Conserved 108531863
chr4 2536980 2539612 POLR2A UCSC Txn Factor no Conserved 108531864
chr4 2538946 2538957 E2F4 JASPAR yes 49190880
chr4 2538947 2538958 E2F1 JASPAR yes 49190881
chr4 2538968 2538982 ZIC1 JASPAR yes 49190882
chr4 2538968 2538983 ZIC3 JASPAR yes 49190883
chr4 2538968 2538983 ZIC4 JASPAR yes 49190884
chr4 2538969 2538980 E2F4 JASPAR yes 49190885
chr4 2538974 2538988 PLAG1 JASPAR yes 49190886
chr4 2538977 2538981 NFE TRANSFAC yes 49190887
chr4 2538979 2538994 TFAP2A JASPAR yes 49190888
chr4 2538983 2538992 TFAP2A JASPAR yes 49190889
chr4 2539007 2539016 THAP1 JASPAR yes 49190890
chr4 2539010 2539015 SP1 TRANSFAC yes 49190891
chr4 2539011 2539016 SP1 TRANSFAC yes 49190892
chr4 2539014 2539019 SP1 TRANSFAC yes 49190893
chr4 2539018 2539023 GATA2 JASPAR yes 49190894
chr4 2539021 2539024 MYB TRANSFAC yes 49190895
chr4 2539026 2539030 H4TF2 TRANSFAC yes 49190896
chr4 2539039 2539060 REST JASPAR yes 49190897
chr4 2539040 2539059 REST JASPAR yes 49190898
chr4 2539051 2539055 H4TF2 TRANSFAC yes 49190899
chr4 2539058 2539062 LFA1 TRANSFAC yes 49190900
chr4 2539062 2539068 SP1 TRANSFAC yes 49190901
chr4 2539062 2539073 E2F1 JASPAR yes 49190902
chr4 2539063 2539068 SP1 TRANSFAC yes 49190903
chr4 2539063 2539078 ZIC4 JASPAR yes 49190904
chr4 2539067 2539076 SNAI2 JASPAR yes 49190905
chr4 2539067 2539077 TCF4 JASPAR yes 49190906
chr4 2539069 2539078 ZEB1 JASPAR yes 49190907
chr4 2539071 2539076 SP1 TRANSFAC yes 49190908
chr4 2539084 2539096 CREB1 JASPAR yes 49190909
chr4 2539087 2539101 XBP1 JASPAR yes 49190910
chr4 2539100 2539104 NFE TRANSFAC yes 49190911
chr4 2539125 2539146 ZNF263 JASPAR yes 49190912
chr4 2539132 2539137 SP1 TRANSFAC yes 49190913
chr4 2539132 2539147 ZIC3 JASPAR yes 49190914
chr4 2539135 2539146 E2F4 JASPAR yes 49190915
chr4 2539135 2539146 E2F6 JASPAR yes 49190916
chr4 2539136 2539141 SP1 TRANSFAC yes 49190917
chr4 2539139 2539145 MAZ TRANSFAC yes 49190918
chr4 2539153 2539158 SP1 TRANSFAC yes 49190919
chr4 2539179 2539183 H4TF2 TRANSFAC yes 49190920
chr4 2539191 2539202 NFKB1 JASPAR yes 49190921
chr4 2539201 2539215 ZIC1 JASPAR yes 49190922
chr4 2539207 2539212 SP1 TRANSFAC yes 49190923
chr4 2539207 2539218 E2F4 JASPAR yes 49190924
chr4 2539208 2539213 SP1 TRANSFAC yes 49190925
chr4 2539208 2539214 SP1 TRANSFAC yes 49190926
chr4 2539213 2539234 REST JASPAR yes 49190927
chr4 2539228 2539247 REST JASPAR yes 49190928
chr4 2539233 2539247 MTF1 JASPAR yes 49190929
chr4 2539250 2539260 GABPA JASPAR yes 49190930
chr4 2539252 2539258 ETS1 JASPAR yes 49190931
chr4 2539252 2539258 SPI1 JASPAR yes 49190932
chr4 2539266 2539271 SP1 TRANSFAC yes 49190933
chr4 2539268 2539281 NFKB2 JASPAR yes 49190934
chr4 2539293 2539307 CREB3L1 JASPAR yes 49190935
chr4 2539295 2539299 NFE TRANSFAC yes 49190936
chr4 2539322 2539341 RFX2 JASPAR yes 49190937
chr4 2539376 2539390 TCF7L2 JASPAR yes 49190938
chr4 2539387 2539403 RFX4 JASPAR yes 49190939
chr4 2539387 2539403 RFX5 JASPAR yes 49190940
chr4 2539395 2539413 IRF2 JASPAR yes 49190941
chr4 2539422 2539434 PBX1 JASPAR yes 49190942
chr4 2539438 2539450 EHF JASPAR yes 49190943
chr4 2539438 2539450 ELF1 JASPAR yes 49190944
chr4 2539438 2539450 ELF4 JASPAR yes 49190945
chr4 2539438 2539451 ELF3 JASPAR yes 49190946
chr4 2539438 2539453 HSF1 JASPAR yes 49190947
chr4 2539439 2539450 ELF5 JASPAR yes 49190948
chr4 2539439 2539450 SPDEF JASPAR yes 49190949
chr4 2539440 2539449 ELK4 JASPAR yes 49190950
chr4 2539440 2539450 ELK1 JASPAR yes 49190951
chr4 2539440 2539450 ELK3 JASPAR yes 49190952
chr4 2539440 2539450 ETS1 JASPAR yes 49190953
chr4 2539440 2539450 ETV1 JASPAR yes 49190954
chr4 2539440 2539450 ETV3 JASPAR yes 49190955
chr4 2539440 2539450 ETV4 JASPAR yes 49190956
chr4 2539440 2539450 ETV5 JASPAR yes 49190957
chr4 2539440 2539450 ETV6 JASPAR yes 49190958
chr4 2539440 2539450 FEV JASPAR yes 49190959
chr4 2539440 2539450 GABPA JASPAR yes 49190960
chr4 2539440 2539451 ELK4 JASPAR yes 49190961
chr4 2539441 2539449 FEV JASPAR yes 49190962
chr4 2539442 2539448 ETS1 JASPAR yes 49190963
chr4 2539442 2539448 SPI1 JASPAR yes 49190964
chr4 2539449 2539464 LEF1 JASPAR yes 49190965
chr4 2539450 2539455 ETS2 TRANSFAC yes 49190966
chr4 2539457 2539461 H4TF2 TRANSFAC yes 49190967
chr4 2539464 2539475 RUNX1 JASPAR yes 49190968
chr4 2539465 2539475 RUNX3 JASPAR yes 49190969
chr4 2539473 2539477 YY1 TRANSFAC yes 49190970
chr4 2539484 2539498 PLAG1 JASPAR yes 49190971
chr4 2539495 2539500 USF2 TRANSFAC yes 49190972
chr4 2539509 2539530 ZNF263 JASPAR yes 49190973
chr4 2539517 2539523 SP1 TRANSFAC yes 49190974
chr4 2539517 2539527 SP1 JASPAR yes 49190975
chr4 2539520 2539530 SP1 JASPAR yes 49190976
chr4 2539531 2539537 LEF1 TRANSFAC yes 49190977
chr4 2539531 2539537 SOX10 JASPAR yes 49190978
chr4 2539542 2539554 INSM1 JASPAR yes 49190979
chr4 2539548 2539560 FOXI1 JASPAR yes 49190980
chr4 2539548 2539568 RREB1 JASPAR yes 49190981
chr4 2539550 2539565 RUNX2 JASPAR yes 49190982
chr4 2539551 2539555 YY1 TRANSFAC yes 49190983
chr4 2539575 2539583 FOXL1 JASPAR yes 49190984
chr4 2539579 2539583 YY1 TRANSFAC yes 49190985
chr4 2539597 2539602 ETS2 TRANSFAC yes 49190986
chr4 2539597 2539607 TEAD1 JASPAR yes 49190987
chr4 2539597 2539607 TEAD4 JASPAR yes 49190988
chr4 2539601 2539615 RXRB JASPAR yes 49190989
chr4 2539601 2539615 RXRG JASPAR yes 49190990
chr4 2539613 2539634 IRF1 JASPAR yes 49190991
chr4 2539617 2539629 IRF1 JASPAR yes 49190992
chr4 2539617 2539631 IRF7 JASPAR yes 49190993
chr4 2539617 2539631 IRF8 JASPAR yes 49190994
chr4 2539617 2539632 IRF9 JASPAR yes 49190995
chr4 2539625 2539631 TCF4 TRANSFAC yes 49190996
chr4 2539626 2539638 FOXC2 JASPAR yes 49190997
chr4 2539626 2539640 FOXF2 JASPAR yes 49190998
chr4 2539627 2539635 FOXG1 JASPAR yes 49190999
chr4 2539627 2539635 FOXO3 JASPAR yes 49191000
chr4 2539644 2539661 NR3C1 JASPAR yes 49191001
chr4 2539644 2539661 NR3C2 JASPAR yes 49191002
chr4 2539661 2539671 GBX2 JASPAR yes 49191003
chr4 2539662 2539666 H1TF2 TRANSFAC yes 49191004
chr4 2539662 2539666 NFE TRANSFAC yes 49191005
chr4 2539662 2539666 SRF TRANSFAC yes 49191006
chr4 2539662 2539670 DLX6 JASPAR yes 49191007
chr4 2539662 2539670 MSX2 JASPAR yes 49191008
chr4 2539668 2539682 TLX1 JASPAR yes 49191009
chr4 2539698 2539702 ESR1 TRANSFAC yes 49191010
chr4 2539706 2539710 YY1 TRANSFAC yes 49191011
SNP sites on vista43927[chr4:2538945-2539718]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr4 2539011 rs552304537 G A
POLR2A SP1 THAP1
7352811
chr4 2539639 rs576051759 G A
FOXF2
7352812
chr4 2539648 rs75804992 C G
NR3C1 NR3C2
7352813
Genes possibly regulated by vista43927[chr4:2538945-2539718]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr4 2451700 2464668 + RP11-503N18.3 ENSG00000249428.1 2451700 0.92 1.0 4472 12755
chr4 2463947 2627047 + RNF4 ENSG00000063978.11 2463947 0.69 0.99 4473 25002
chr4 2626988 2734292 + FAM193A ENSG00000125386.10 2626988 0.68 0.99 4474 12730
Expression level of Genes
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miRNAs possibly regulated by vista43927[chr4:2538945-2539718]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results