EnhancerDB
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  3. vista45390[chr4:90220460-90220760]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista45390[chr4:90220460-90220760]
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Tissue distribution of vista45390
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Transcription factor that possibly regulate vista45390[chr4:90220460-90220760]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr4 90220466 90220476 GSC2 JASPAR yes 49258507
chr4 90220466 90220476 GSC2 JASPAR yes 91226360
chr4 90220467 90220475 OTX1 JASPAR yes 49258508
chr4 90220467 90220475 OTX2 JASPAR yes 49258509
chr4 90220467 90220475 OTX1 JASPAR yes 91226361
chr4 90220467 90220475 OTX2 JASPAR yes 91226362
chr4 90220467 90220476 PITX3 JASPAR yes 49258510
chr4 90220467 90220476 PITX3 JASPAR yes 91226363
chr4 90220467 90220483 POU4F3 JASPAR yes 49258511
chr4 90220467 90220483 POU4F3 JASPAR yes 91226364
chr4 90220469 90220484 HNF1A JASPAR yes 49258512
chr4 90220469 90220484 HNF1A JASPAR yes 91226365
chr4 90220470 90220483 HNF1B JASPAR yes 49258513
chr4 90220470 90220483 HNF1B JASPAR yes 91226366
chr4 90220473 90220483 HOXB2 JASPAR yes 49258514
chr4 90220473 90220483 HOXB3 JASPAR yes 49258515
chr4 90220473 90220483 MNX1 JASPAR yes 49258516
chr4 90220473 90220483 HOXB2 JASPAR yes 91226367
chr4 90220473 90220483 HOXB3 JASPAR yes 91226368
chr4 90220473 90220483 MNX1 JASPAR yes 91226369
chr4 90220474 90220482 LBX1 JASPAR yes 49258517
chr4 90220474 90220482 PDX1 JASPAR yes 49258518
chr4 90220474 90220482 VAX1 JASPAR yes 49258519
chr4 90220474 90220482 VAX2 JASPAR yes 49258520
chr4 90220474 90220482 VSX1 JASPAR yes 49258521
chr4 90220474 90220482 VSX2 JASPAR yes 49258522
chr4 90220474 90220482 LBX1 JASPAR yes 91226370
chr4 90220474 90220482 PDX1 JASPAR yes 91226371
chr4 90220474 90220482 VAX1 JASPAR yes 91226372
chr4 90220474 90220482 VAX2 JASPAR yes 91226373
chr4 90220474 90220482 VSX1 JASPAR yes 91226374
chr4 90220474 90220482 VSX2 JASPAR yes 91226375
chr4 90220474 90220484 POU6F2 JASPAR yes 49258523
chr4 90220474 90220484 POU6F2 JASPAR yes 91226376
chr4 90220475 90220486 PHOX2A JASPAR yes 49258524
chr4 90220475 90220486 PHOX2A JASPAR yes 91226377
chr4 90220478 90220495 ZNF410 JASPAR yes 49258525
chr4 90220478 90220495 ZNF410 JASPAR yes 91226378
chr4 90220494 90220509 MEF2A JASPAR yes 49258526
chr4 90220494 90220509 MEF2A JASPAR yes 91226379
chr4 90220521 90220531 ZNF740 JASPAR yes 49258527
chr4 90220521 90220531 ZNF740 JASPAR yes 91226380
chr4 90220544 90220558 SPIC JASPAR yes 49258528
chr4 90220544 90220558 SPIC JASPAR yes 91226381
chr4 90220549 90220557 EHF JASPAR yes 49258529
chr4 90220549 90220557 EHF JASPAR yes 91226382
chr4 90220549 90220564 PRDM1 JASPAR yes 49258530
chr4 90220549 90220564 PRDM1 JASPAR yes 91226383
chr4 90220553 90220558 ETS2 TRANSFAC yes 49258531
chr4 90220553 90220558 ETS2 TRANSFAC yes 91226384
chr4 90220589 90220594 H4TF1 TRANSFAC yes 49258532
chr4 90220589 90220594 H4TF1 TRANSFAC yes 91226385
chr4 90220603 90220623 PPARG JASPAR yes 49258533
chr4 90220603 90220623 PPARG JASPAR yes 91226386
chr4 90220632 90220636 NFE TRANSFAC yes 49258534
chr4 90220632 90220636 NFE TRANSFAC yes 91226387
chr4 90220640 90220650 NFATC3 JASPAR yes 49258535
chr4 90220640 90220650 NFATC3 JASPAR yes 91226388
chr4 90220641 90220648 NFATC2 JASPAR yes 49258536
chr4 90220641 90220648 NFATC2 JASPAR yes 91226389
chr4 90220641 90220653 YY1 JASPAR yes 49258537
chr4 90220641 90220653 YY1 JASPAR yes 91226390
chr4 90220664 90220668 LFA1 TRANSFAC yes 49258538
chr4 90220664 90220668 LFA1 TRANSFAC yes 91226391
chr4 90220667 90220671 YY1 TRANSFAC yes 49258539
chr4 90220667 90220671 YY1 TRANSFAC yes 91226392
chr4 90220677 90220681 YY1 TRANSFAC yes 49258540
chr4 90220677 90220681 YY1 TRANSFAC yes 91226393
chr4 90220684 90220700 POU4F3 JASPAR yes 49258541
chr4 90220684 90220700 POU4F3 JASPAR yes 91226394
chr4 90220686 90220700 POU4F1 JASPAR yes 49258542
chr4 90220686 90220700 POU4F1 JASPAR yes 91226395
chr4 90220687 90220701 POU4F1 JASPAR yes 49258543
chr4 90220687 90220701 POU4F1 JASPAR yes 91226396
chr4 90220710 90220720 SREBF1 JASPAR yes 49258544
chr4 90220710 90220720 SREBF2 JASPAR yes 49258545
chr4 90220710 90220720 SREBF1 JASPAR yes 91226397
chr4 90220710 90220720 SREBF2 JASPAR yes 91226398
chr4 90220717 90220721 YY1 TRANSFAC yes 49258546
chr4 90220717 90220721 YY1 TRANSFAC yes 91226399
chr4 90220722 90220738 RFX2 JASPAR yes 49258547
chr4 90220722 90220738 RFX3 JASPAR yes 49258548
chr4 90220722 90220738 RFX4 JASPAR yes 49258549
chr4 90220722 90220738 RFX5 JASPAR yes 49258550
chr4 90220722 90220738 RFX2 JASPAR yes 91226400
chr4 90220722 90220738 RFX3 JASPAR yes 91226401
chr4 90220722 90220738 RFX4 JASPAR yes 91226402
chr4 90220722 90220738 RFX5 JASPAR yes 91226403
chr4 90220723 90220742 RFX2 JASPAR yes 49258551
chr4 90220723 90220742 RFX2 JASPAR yes 91226404
chr4 90220733 90220736 MYB TRANSFAC yes 49258552
chr4 90220733 90220736 MYB TRANSFAC yes 91226405
chr4 90220753 90220762 NKX2-8 JASPAR yes 49258553
chr4 90220753 90220762 NKX2-8 JASPAR yes 91226406
SNP sites on vista45390[chr4:90220460-90220760]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr4 90220481 rs572790997 A G
HNF1A HNF1B HOXB2 HOXB3 LBX1 MNX1 PDX1 PHOX2A POU4F3 POU6F2 VAX1 VAX2 VSX1 VSX2 ZNF410
7681315
chr4 90220549 rs574004121 T C
EHF PRDM1 SPIC
7681316
chr4 90220596 rs72872597 A C no 7681317
chr4 90220620 rs182619689 C T
PPARG
7681318
chr4 90220659 rs1431545 C T no 7681319
Genes possibly regulated by vista45390[chr4:90220460-90220760]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr4 90157537 90229161 - GPRIN3 ENSG00000185477.4 90229161 0.85 0.91 4870 91599
Expression level of Genes
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miRNAs possibly regulated by vista45390[chr4:90220460-90220760]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results