EnhancerDB
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  3. vista47010[chr5:9544480-9544834]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista47010[chr5:9544480-9544834]
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Tissue distribution of vista47010
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Transcription factor that possibly regulate vista47010[chr5:9544480-9544834]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr5 9544586 9544862 EGR1 UCSC Txn Factor no Conserved 108534304
chr5 9544593 9544891 RAD21 UCSC Txn Factor no Conserved 108534305
chr5 9544595 9544962 CTCF UCSC Txn Factor no Conserved 108534306
chr5 9544614 9544889 SMC3 UCSC Txn Factor no Conserved 108534307
chr5 9544695 9545401 E2F1 UCSC Txn Factor no Conserved 108534308
chr5 9544488 9544493 ETS2 TRANSFAC yes 70617630
chr5 9544541 9544545 YY1 TRANSFAC yes 70617631
chr5 9544566 9544570 NFE TRANSFAC yes 70617632
chr5 9544583 9544596 SMAD2 JASPAR yes 70617633
chr5 9544588 9544600 PKNOX1 JASPAR yes 70617634
chr5 9544588 9544600 PKNOX2 JASPAR yes 70617635
chr5 9544588 9544600 TGIF1 JASPAR yes 70617636
chr5 9544588 9544600 TGIF2 JASPAR yes 70617637
chr5 9544618 9544638 RREB1 JASPAR yes 70617638
chr5 9544626 9544636 SP1 JASPAR yes 70617639
chr5 9544634 9544648 IRF7 JASPAR yes 70617640
chr5 9544638 9544649 PHOX2A JASPAR yes 70617641
chr5 9544638 9544649 PROP1 JASPAR yes 70617642
chr5 9544669 9544681 FOXI1 JASPAR yes 70617643
chr5 9544686 9544697 E2F4 JASPAR yes 70617644
chr5 9544686 9544697 E2F6 JASPAR yes 70617645
chr5 9544691 9544696 SP1 TRANSFAC yes 70617646
chr5 9544753 9544772 CTCF JASPAR yes 70617647
chr5 9544756 9544770 ZIC1 JASPAR yes 70617648
chr5 9544756 9544771 ZIC3 JASPAR yes 70617649
chr5 9544756 9544771 ZIC4 JASPAR yes 70617650
chr5 9544762 9544773 STAT1 JASPAR yes 70617651
chr5 9544762 9544773 STAT3 JASPAR yes 70617652
chr5 9544766 9544776 RELA JASPAR yes 70617653
chr5 9544767 9544777 RELA JASPAR yes 70617654
chr5 9544774 9544786 HINFP JASPAR yes 70617655
chr5 9544781 9544792 TFAP2A JASPAR yes 70617656
chr5 9544781 9544792 TFAP2B JASPAR yes 70617657
chr5 9544781 9544792 TFAP2C JASPAR yes 70617658
chr5 9544783 9544794 NRF1 JASPAR yes 70617659
chr5 9544818 9544834 ZNF143 JASPAR yes 70617660
chr5 9544821 9544832 SPDEF JASPAR yes 70617661
SNP sites on vista47010[chr5:9544480-9544834]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr5 9544480 rs144599270 T C no 8077680
chr5 9544544 rs422722 T C
YY1
8077681
chr5 9544548 rs112409995 T C no 8077682
chr5 9544552 rs424773 T A no 8077683
chr5 9544599 rs189644924 C A
CTCF EGR1 PKNOX1 PKNOX2 RAD21 TGIF1 TGIF2
8077684
chr5 9544603 rs191975863 A T
CTCF EGR1 RAD21
8077685
chr5 9544638 rs56411742 A G
CTCF EGR1 IRF7 PHOX2A PROP1 RAD21 RREB1 SMC3
8077686
chr5 9544677 rs1319222 T G
CTCF EGR1 FOXI1 RAD21 SMC3
8077687
chr5 9544829 rs788321 T A
CTCF E2F1 EGR1 RAD21 SMC3 SPDEF ZNF143
8077688
Genes possibly regulated by vista47010[chr5:9544480-9544834]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr5 9035138 9546187 - SEMA5A ENSG00000112902.7 9546187 0.89 0.93 5244 98647
Expression level of Genes
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miRNAs possibly regulated by vista47010[chr5:9544480-9544834]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results