EnhancerDB
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  3. vista478[chr1:15664307-15664455]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista478[chr1:15664307-15664455]
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Tissue distribution of vista478
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Transcription factor that possibly regulate vista478[chr1:15664307-15664455]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 15664303 15664307 NFE TRANSFAC yes 26979204
chr1 15664303 15664307 NFE TRANSFAC yes 118236372
chr1 15664306 15664325 REST JASPAR yes 26979205
chr1 15664306 15664325 REST JASPAR yes 118236373
chr1 15664319 15664333 JUN JASPAR yes 26979206
chr1 15664319 15664333 JUN JASPAR yes 118236374
chr1 15664320 15664338 ESR1 JASPAR yes 26979207
chr1 15664320 15664338 ESR1 JASPAR yes 118236375
chr1 15664322 15664333 FOSL2 JASPAR yes 26979208
chr1 15664322 15664333 JUNB JASPAR yes 26979209
chr1 15664322 15664333 FOSL2 JASPAR yes 118236376
chr1 15664322 15664333 JUNB JASPAR yes 118236377
chr1 15664323 15664334 FOS JASPAR yes 26979210
chr1 15664323 15664334 FOSL1 JASPAR yes 26979211
chr1 15664323 15664334 JUND JASPAR yes 26979212
chr1 15664323 15664334 FOS JASPAR yes 118236378
chr1 15664323 15664334 FOSL1 JASPAR yes 118236379
chr1 15664323 15664334 JUND JASPAR yes 118236380
chr1 15664324 15664331 JUN TRANSFAC yes 26979213
chr1 15664324 15664331 JUN TRANSFAC yes 118236381
chr1 15664324 15664338 JUN JASPAR yes 26979214
chr1 15664324 15664338 JUN JASPAR yes 118236382
chr1 15664325 15664336 BATF JASPAR yes 26979215
chr1 15664325 15664336 BATF JASPAR yes 118236383
chr1 15664341 15664349 MGA JASPAR yes 26979216
chr1 15664341 15664349 MGA JASPAR yes 118236384
chr1 15664345 15664354 VENTX JASPAR yes 26979217
chr1 15664345 15664354 VENTX JASPAR yes 118236385
chr1 15664345 15664355 EN2 JASPAR yes 26979218
chr1 15664345 15664355 ESX1 JASPAR yes 26979219
chr1 15664345 15664355 GBX1 JASPAR yes 26979220
chr1 15664345 15664355 GBX2 JASPAR yes 26979221
chr1 15664345 15664355 GSX1 JASPAR yes 26979222
chr1 15664345 15664355 HESX1 JASPAR yes 26979223
chr1 15664345 15664355 HOXB3 JASPAR yes 26979224
chr1 15664345 15664355 LBX2 JASPAR yes 26979225
chr1 15664345 15664355 LHX2 JASPAR yes 26979226
chr1 15664345 15664355 RAX JASPAR yes 26979227
chr1 15664345 15664355 EN2 JASPAR yes 118236386
chr1 15664345 15664355 ESX1 JASPAR yes 118236387
chr1 15664345 15664355 GBX1 JASPAR yes 118236388
chr1 15664345 15664355 GBX2 JASPAR yes 118236389
chr1 15664345 15664355 GSX1 JASPAR yes 118236390
chr1 15664345 15664355 HESX1 JASPAR yes 118236391
chr1 15664345 15664355 HOXB3 JASPAR yes 118236392
chr1 15664345 15664355 LBX2 JASPAR yes 118236393
chr1 15664345 15664355 LHX2 JASPAR yes 118236394
chr1 15664345 15664355 RAX JASPAR yes 118236395
chr1 15664346 15664350 H1TF2 TRANSFAC yes 26979228
chr1 15664346 15664350 NFE TRANSFAC yes 26979229
chr1 15664346 15664350 SRF TRANSFAC yes 26979230
chr1 15664346 15664350 H1TF2 TRANSFAC yes 118236396
chr1 15664346 15664350 NFE TRANSFAC yes 118236397
chr1 15664346 15664350 SRF TRANSFAC yes 118236398
chr1 15664346 15664354 BARX1 JASPAR yes 26979231
chr1 15664346 15664354 BSX JASPAR yes 26979232
chr1 15664346 15664354 EN1 JASPAR yes 26979233
chr1 15664346 15664354 ISX JASPAR yes 26979234
chr1 15664346 15664354 LHX9 JASPAR yes 26979235
chr1 15664346 15664354 MSX1 JASPAR yes 26979236
chr1 15664346 15664354 MSX2 JASPAR yes 26979237
chr1 15664346 15664354 PRRX1 JASPAR yes 26979238
chr1 15664346 15664354 RAX2 JASPAR yes 26979239
chr1 15664346 15664354 SHOX JASPAR yes 26979240
chr1 15664346 15664354 BARX1 JASPAR yes 118236399
chr1 15664346 15664354 BSX JASPAR yes 118236400
chr1 15664346 15664354 EN1 JASPAR yes 118236401
chr1 15664346 15664354 ISX JASPAR yes 118236402
chr1 15664346 15664354 LHX9 JASPAR yes 118236403
chr1 15664346 15664354 MSX1 JASPAR yes 118236404
chr1 15664346 15664354 MSX2 JASPAR yes 118236405
chr1 15664346 15664354 PRRX1 JASPAR yes 118236406
chr1 15664346 15664354 RAX2 JASPAR yes 118236407
chr1 15664346 15664354 SHOX JASPAR yes 118236408
chr1 15664388 15664392 LFA1 TRANSFAC yes 26979241
chr1 15664388 15664392 LFA1 TRANSFAC yes 118236409
chr1 15664422 15664434 MEF2B JASPAR yes 26979242
chr1 15664422 15664434 MEF2B JASPAR yes 118236410
chr1 15664424 15664428 TEAD2 TRANSFAC yes 26979243
chr1 15664424 15664428 TEAD2 TRANSFAC yes 118236411
chr1 15664424 15664429 TBP TRANSFAC yes 26979244
chr1 15664424 15664429 TBP TRANSFAC yes 118236412
chr1 15664424 15664430 TMF TRANSFAC yes 26979245
chr1 15664424 15664430 TMF TRANSFAC yes 118236413
chr1 15664431 15664436 TFAP2A TRANSFAC yes 26979246
chr1 15664431 15664436 TFAP2A TRANSFAC yes 118236414
chr1 15664431 15664437 MZF1 JASPAR yes 26979247
chr1 15664431 15664437 MZF1 JASPAR yes 118236415
chr1 15664440 15664449 HIC2 JASPAR yes 26979248
chr1 15664440 15664449 HIC2 JASPAR yes 118236416
chr1 15664443 15664447 LFA1 TRANSFAC yes 26979249
chr1 15664443 15664447 LFA1 TRANSFAC yes 118236417
chr1 15664448 15664452 YY1 TRANSFAC yes 26979250
chr1 15664448 15664452 YY1 TRANSFAC yes 118236418
chr1 15664453 15664467 PAX6 JASPAR yes 26979251
chr1 15664453 15664467 PAX6 JASPAR yes 118236419
SNP sites on vista478[chr1:15664307-15664455]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 15664347 rs72864900 C A
BARX1 BSX EN1 EN2 ESX1 GBX1 GBX2 GSX1 H1TF2 HESX1 HOXB3 ISX LBX2 LHX2 LHX9 MGA MSX1 MSX2 NFE PRRX1 RAX RAX2 SHOX SRF VENTX
104484
chr1 15664410 rs149995345 C T no 104485
Genes possibly regulated by vista478[chr1:15664307-15664455]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 15573768 15726779 + FHAD1 ENSG00000142621.15 15573768 0.93 1.0 204 9461
chr1 15736391 15756839 + EFHD2 ENSG00000142634.8 15736391 0.81 1.0 205 28064
Expression level of Genes
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miRNAs possibly regulated by vista478[chr1:15664307-15664455]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results