EnhancerDB
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  3. vista4871[chr1:208418631-208418859]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista4871[chr1:208418631-208418859]
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Tissue distribution of vista4871
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Transcription factor that possibly regulate vista4871[chr1:208418631-208418859]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 208418572 208419177 CTCF UCSC Txn Factor no Conserved 107865580
chr1 208418620 208418908 SMC3 UCSC Txn Factor no Conserved 107865591
chr1 208418632 208418896 RAD21 UCSC Txn Factor no Conserved 107865593
chr1 208418640 208418651 STAT3 JASPAR yes 118447255
chr1 208418641 208418647 ETS1 JASPAR yes 118447256
chr1 208418641 208418653 ELF1 JASPAR yes 118447257
chr1 208418641 208418653 ELF4 JASPAR yes 118447258
chr1 208418643 208418652 ELK4 JASPAR yes 118447259
chr1 208418643 208418653 ELK1 JASPAR yes 118447260
chr1 208418643 208418653 ELK3 JASPAR yes 118447261
chr1 208418643 208418653 ERG JASPAR yes 118447262
chr1 208418643 208418653 ETS1 JASPAR yes 118447263
chr1 208418643 208418653 ETV1 JASPAR yes 118447264
chr1 208418643 208418653 ETV4 JASPAR yes 118447265
chr1 208418643 208418653 ETV5 JASPAR yes 118447266
chr1 208418643 208418653 FEV JASPAR yes 118447267
chr1 208418643 208418653 FLI1 JASPAR yes 118447268
chr1 208418643 208418654 ELK4 JASPAR yes 118447269
chr1 208418643 208418654 FLI1 JASPAR yes 118447270
chr1 208418645 208418651 ETS1 JASPAR yes 118447271
chr1 208418645 208418651 SPI1 JASPAR yes 118447272
chr1 208418731 208418735 NFE TRANSFAC yes 118447273
chr1 208418743 208418757 GATA2 JASPAR yes 118447274
chr1 208418745 208418751 GATA1 TRANSFAC yes 118447275
chr1 208418753 208418760 SPIB JASPAR yes 118447276
chr1 208418759 208418778 CTCF JASPAR yes 118447277
chr1 208418776 208418788 TEAD1 JASPAR yes 118447278
chr1 208418791 208418795 TEAD2 TRANSFAC yes 118447279
chr1 208418791 208418796 TBP TRANSFAC yes 118447280
chr1 208418791 208418797 TMF TRANSFAC yes 118447281
chr1 208418799 208418805 TBP TRANSFAC yes 118447282
chr1 208418801 208418813 FOXC2 JASPAR yes 118447283
SNP sites on vista4871[chr1:208418631-208418859]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 208418657 rs546240381 T C
CTCF RAD21 SMC3
899888
chr1 208418681 rs377743685 G C
CTCF RAD21 SMC3
899889
chr1 208418685 rs112232784 G C
CTCF RAD21 SMC3
899890
chr1 208418686 rs6684281 A C
CTCF RAD21 SMC3
899891
chr1 208418704 rs115230394 C G
CTCF RAD21 SMC3
899892
Genes possibly regulated by vista4871[chr1:208418631-208418859]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 208195587 208417665 - PLXNA2 ENSG00000076356.6 208417665 0.81 0.98 1804 99034
Expression level of Genes
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miRNAs possibly regulated by vista4871[chr1:208418631-208418859]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr1 209605548 209605568 + hsa-miR-205-3p MIMAT0009197 209602164 1.2675122663499576e-06 0.947205 0.692021 121
Expression level of miRNAs
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