EnhancerDB
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  3. vista49488[chr5:145808290-145808429]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista49488[chr5:145808290-145808429]
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Tissue distribution of vista49488
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Transcription factor that possibly regulate vista49488[chr5:145808290-145808429]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr5 145808283 145808295 PKNOX1 JASPAR yes 66655017
chr5 145808283 145808295 PKNOX2 JASPAR yes 66655018
chr5 145808283 145808295 TGIF2 JASPAR yes 66655019
chr5 145808283 145808295 PKNOX1 JASPAR yes 70731275
chr5 145808283 145808295 PKNOX2 JASPAR yes 70731276
chr5 145808283 145808295 TGIF2 JASPAR yes 70731277
chr5 145808284 145808294 ID4 JASPAR yes 66655020
chr5 145808284 145808294 ID4 JASPAR yes 70731278
chr5 145808285 145808294 SNAI2 JASPAR yes 66655021
chr5 145808285 145808294 SNAI2 JASPAR yes 70731279
chr5 145808286 145808291 USF2 TRANSFAC yes 66655022
chr5 145808286 145808291 USF2 TRANSFAC yes 70731280
chr5 145808290 145808302 TGIF1 JASPAR yes 66655023
chr5 145808290 145808302 TGIF1 JASPAR yes 70731281
chr5 145808312 145808323 HOXC13 JASPAR yes 66655024
chr5 145808312 145808323 HOXD12 JASPAR yes 66655025
chr5 145808312 145808323 HOXC13 JASPAR yes 70731282
chr5 145808312 145808323 HOXD12 JASPAR yes 70731283
chr5 145808313 145808322 CDX1 JASPAR yes 66655026
chr5 145808313 145808322 CDX1 JASPAR yes 70731284
chr5 145808313 145808323 HOXA13 JASPAR yes 66655027
chr5 145808313 145808323 HOXB13 JASPAR yes 66655028
chr5 145808313 145808323 HOXC10 JASPAR yes 66655029
chr5 145808313 145808323 HOXD11 JASPAR yes 66655030
chr5 145808313 145808323 HOXD13 JASPAR yes 66655031
chr5 145808313 145808323 HOXA13 JASPAR yes 70731285
chr5 145808313 145808323 HOXB13 JASPAR yes 70731286
chr5 145808313 145808323 HOXC10 JASPAR yes 70731287
chr5 145808313 145808323 HOXD11 JASPAR yes 70731288
chr5 145808313 145808323 HOXD13 JASPAR yes 70731289
chr5 145808318 145808330 YY1 JASPAR yes 66655032
chr5 145808318 145808330 YY1 JASPAR yes 70731290
chr5 145808323 145808334 CDX2 JASPAR yes 66655033
chr5 145808323 145808334 CDX2 JASPAR yes 70731291
chr5 145808324 145808335 HOXA10 JASPAR yes 66655034
chr5 145808324 145808335 HOXA10 JASPAR yes 70731292
chr5 145808325 145808334 CDX1 JASPAR yes 66655035
chr5 145808325 145808334 CDX1 JASPAR yes 70731293
chr5 145808331 145808345 MTF1 JASPAR yes 66655036
chr5 145808331 145808345 MTF1 JASPAR yes 70731294
chr5 145808350 145808367 ZNF410 JASPAR yes 66655037
chr5 145808350 145808367 ZNF410 JASPAR yes 70731295
chr5 145808364 145808374 SREBF1 JASPAR yes 66655038
chr5 145808364 145808374 SREBF2 JASPAR yes 66655039
chr5 145808364 145808374 TFEB JASPAR yes 66655040
chr5 145808364 145808374 SREBF1 JASPAR yes 70731296
chr5 145808364 145808374 SREBF2 JASPAR yes 70731297
chr5 145808364 145808374 TFEB JASPAR yes 70731298
chr5 145808367 145808384 RXRA JASPAR yes 66655041
chr5 145808367 145808384 RXRA JASPAR yes 70731299
chr5 145808383 145808396 TFAP2A JASPAR yes 66655042
chr5 145808383 145808396 TFAP2B JASPAR yes 66655043
chr5 145808383 145808396 TFAP2C JASPAR yes 66655044
chr5 145808383 145808396 TFAP2A JASPAR yes 70731300
chr5 145808383 145808396 TFAP2B JASPAR yes 70731301
chr5 145808383 145808396 TFAP2C JASPAR yes 70731302
chr5 145808385 145808396 TFAP2A JASPAR yes 66655045
chr5 145808385 145808396 TFAP2B JASPAR yes 66655046
chr5 145808385 145808396 TFAP2A JASPAR yes 70731303
chr5 145808385 145808396 TFAP2B JASPAR yes 70731304
chr5 145808392 145808403 CDX2 JASPAR yes 66655047
chr5 145808392 145808403 CDX2 JASPAR yes 70731305
chr5 145808393 145808404 HOXC11 JASPAR yes 66655048
chr5 145808393 145808404 HOXC12 JASPAR yes 66655049
chr5 145808393 145808404 HOXC13 JASPAR yes 66655050
chr5 145808393 145808404 HOXD12 JASPAR yes 66655051
chr5 145808393 145808404 HOXC11 JASPAR yes 70731306
chr5 145808393 145808404 HOXC12 JASPAR yes 70731307
chr5 145808393 145808404 HOXC13 JASPAR yes 70731308
chr5 145808393 145808404 HOXD12 JASPAR yes 70731309
chr5 145808394 145808403 CDX1 JASPAR yes 66655052
chr5 145808394 145808403 CDX1 JASPAR yes 70731310
chr5 145808394 145808404 HOXA13 JASPAR yes 66655053
chr5 145808394 145808404 HOXC10 JASPAR yes 66655054
chr5 145808394 145808404 HOXD13 JASPAR yes 66655055
chr5 145808394 145808404 HOXA13 JASPAR yes 70731311
chr5 145808394 145808404 HOXC10 JASPAR yes 70731312
chr5 145808394 145808404 HOXD13 JASPAR yes 70731313
chr5 145808401 145808421 TP53 JASPAR yes 66655056
chr5 145808401 145808421 TP53 JASPAR yes 70731314
chr5 145808403 145808423 TP63 JASPAR yes 66655057
chr5 145808403 145808423 TP63 JASPAR yes 70731315
chr5 145808404 145808422 TP53 JASPAR yes 66655058
chr5 145808404 145808422 TP63 JASPAR yes 66655059
chr5 145808404 145808422 TP73 JASPAR yes 66655060
chr5 145808404 145808422 TP53 JASPAR yes 70731316
chr5 145808404 145808422 TP63 JASPAR yes 70731317
chr5 145808404 145808422 TP73 JASPAR yes 70731318
chr5 145808405 145808420 TP53 JASPAR yes 66655061
chr5 145808405 145808420 TP53 JASPAR yes 70731319
chr5 145808406 145808421 TP53 JASPAR yes 66655062
chr5 145808406 145808421 TP53 JASPAR yes 70731320
chr5 145808422 145808437 RUNX2 JASPAR yes 66655063
chr5 145808422 145808437 RUNX2 JASPAR yes 70731321
SNP sites on vista49488[chr5:145808290-145808429]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr5 145808313 rs536462551 C T
CDX1 HOXA13 HOXB13 HOXC10 HOXC13 HOXD11 HOXD12 HOXD13
8593086
chr5 145808349 rs10477300 G A no 8593087
chr5 145808408 rs7712762 A G
TP53 TP63 TP73
8593088
Genes possibly regulated by vista49488[chr5:145808290-145808429]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr5 145718587 145720083 + POU4F3 ENSG00000091010.4 145718587 0.62 1.0 5840 10297
chr5 145826874 145891524 + TCERG1 ENSG00000113649.7 145826874 0.68 0.99 5841 81555
chr5 145892666 145895753 - GPR151 ENSG00000173250.2 145895753 0.98 0.95 5842 12676
Expression level of Genes
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miRNAs possibly regulated by vista49488[chr5:145808290-145808429]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results