EnhancerDB
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  3. vista49642[chr5:149649694-149650062]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista49642[chr5:149649694-149650062]
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Tissue distribution of vista49642
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Transcription factor that possibly regulate vista49642[chr5:149649694-149650062]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr5 149649690 149649699 SNAI2 JASPAR yes 66868314
chr5 149649690 149649699 SNAI2 JASPAR yes 70738168
chr5 149649691 149649696 USF2 TRANSFAC yes 66868315
chr5 149649691 149649696 USF2 TRANSFAC yes 70738169
chr5 149649705 149649708 MYB TRANSFAC yes 66868316
chr5 149649705 149649708 MYB TRANSFAC yes 70738170
chr5 149649770 149649780 HOXA13 JASPAR yes 66868317
chr5 149649770 149649780 HOXA13 JASPAR yes 70738171
chr5 149649828 149649838 NHLH1 JASPAR yes 66868318
chr5 149649828 149649838 NHLH1 JASPAR yes 70738172
chr5 149649833 149649851 SRF JASPAR yes 66868319
chr5 149649833 149649851 SRF JASPAR yes 70738173
chr5 149649868 149649878 GSC2 JASPAR yes 66868320
chr5 149649868 149649878 GSC JASPAR yes 66868321
chr5 149649868 149649878 GSC2 JASPAR yes 70738174
chr5 149649868 149649878 GSC JASPAR yes 70738175
chr5 149649869 149649877 OTX1 JASPAR yes 66868322
chr5 149649869 149649877 OTX1 JASPAR yes 70738176
chr5 149649869 149649878 PITX3 JASPAR yes 66868323
chr5 149649869 149649878 PITX3 JASPAR yes 70738177
chr5 149649882 149649900 IRF2 JASPAR yes 66868324
chr5 149649882 149649900 IRF2 JASPAR yes 70738178
chr5 149649883 149649904 IRF1 JASPAR yes 66868325
chr5 149649883 149649904 IRF1 JASPAR yes 70738179
chr5 149649885 149649900 PRDM1 JASPAR yes 66868326
chr5 149649885 149649900 PRDM1 JASPAR yes 70738180
chr5 149649886 149649900 STAT1 JASPAR yes 66868327
chr5 149649886 149649900 STAT1 JASPAR yes 70738181
chr5 149649887 149649899 IRF1 JASPAR yes 66868328
chr5 149649887 149649899 IRF1 JASPAR yes 70738182
chr5 149649887 149649901 IRF7 JASPAR yes 66868329
chr5 149649887 149649901 IRF7 JASPAR yes 70738183
chr5 149649904 149649908 YY1 TRANSFAC yes 66868330
chr5 149649904 149649908 YY1 TRANSFAC yes 70738184
chr5 149649915 149649930 STAT1 JASPAR yes 66868331
chr5 149649915 149649930 STAT1 JASPAR yes 70738185
chr5 149649917 149649931 TCF7L2 JASPAR yes 66868332
chr5 149649917 149649931 TCF7L2 JASPAR yes 70738186
chr5 149649922 149649936 POU4F1 JASPAR yes 66868333
chr5 149649922 149649936 POU4F1 JASPAR yes 70738187
chr5 149649926 149649935 SRY JASPAR yes 66868334
chr5 149649926 149649935 SRY JASPAR yes 70738188
chr5 149649926 149649937 FOXP2 JASPAR yes 66868335
chr5 149649926 149649937 FOXP2 JASPAR yes 70738189
chr5 149649926 149649938 FOXC2 JASPAR yes 66868336
chr5 149649926 149649938 FOXC2 JASPAR yes 70738190
chr5 149649927 149649935 FOXG1 JASPAR yes 66868337
chr5 149649927 149649935 FOXO3 JASPAR yes 66868338
chr5 149649927 149649935 FOXG1 JASPAR yes 70738191
chr5 149649927 149649935 FOXO3 JASPAR yes 70738192
chr5 149649927 149649938 FOXC1 JASPAR yes 66868339
chr5 149649927 149649938 FOXC1 JASPAR yes 70738193
chr5 149649943 149649947 YY1 TRANSFAC yes 66868340
chr5 149649943 149649947 YY1 TRANSFAC yes 70738194
chr5 149649958 149649974 POU4F3 JASPAR yes 66868341
chr5 149649958 149649974 POU4F3 JASPAR yes 70738195
chr5 149649959 149649974 MEF2C JASPAR yes 66868342
chr5 149649959 149649974 MEF2C JASPAR yes 70738196
chr5 149649960 149649974 POU4F1 JASPAR yes 66868343
chr5 149649960 149649974 POU4F1 JASPAR yes 70738197
chr5 149649960 149649975 MEF2A JASPAR yes 66868344
chr5 149649960 149649975 MEF2A JASPAR yes 70738198
chr5 149649961 149649973 MEF2D JASPAR yes 66868345
chr5 149649961 149649973 MEF2D JASPAR yes 70738199
chr5 149649967 149649975 FOXL1 JASPAR yes 66868346
chr5 149649967 149649975 FOXL1 JASPAR yes 70738200
chr5 149649974 149649986 FOXI1 JASPAR yes 66868347
chr5 149649974 149649986 FOXI1 JASPAR yes 70738201
chr5 149650009 149650030 ZNF263 JASPAR yes 66868348
chr5 149650009 149650030 ZNF263 JASPAR yes 70738202
chr5 149650018 149650028 SP1 JASPAR yes 66868349
chr5 149650018 149650028 SP1 JASPAR yes 70738203
chr5 149650018 149650039 ZNF263 JASPAR yes 66868350
chr5 149650018 149650039 ZNF263 JASPAR yes 70738204
chr5 149650019 149650023 LFA1 TRANSFAC yes 66868351
chr5 149650019 149650023 LFA1 TRANSFAC yes 70738205
chr5 149650025 149650030 SP1 TRANSFAC yes 66868352
chr5 149650025 149650030 SP1 TRANSFAC yes 70738206
chr5 149650028 149650032 LFA1 TRANSFAC yes 66868353
chr5 149650028 149650032 LFA1 TRANSFAC yes 70738207
chr5 149650029 149650044 STAT2 JASPAR yes 66868354
chr5 149650029 149650044 STAT2 JASPAR yes 70738208
chr5 149650036 149650048 IRF1 JASPAR yes 66868355
chr5 149650036 149650048 IRF1 JASPAR yes 70738209
chr5 149650037 149650052 RUNX2 JASPAR yes 66868356
chr5 149650037 149650052 RUNX2 JASPAR yes 70738210
chr5 149650043 149650062 REST JASPAR yes 66868357
chr5 149650043 149650062 REST JASPAR yes 70738211
chr5 149650052 149650058 MAZ TRANSFAC yes 66868358
chr5 149650052 149650058 MAZ TRANSFAC yes 70738212
chr5 149650057 149650062 SP1 TRANSFAC yes 66868359
chr5 149650057 149650062 SP1 TRANSFAC yes 70738213
chr5 149650057 149650066 HIC2 JASPAR yes 66868360
chr5 149650057 149650066 HIC2 JASPAR yes 70738214
chr5 149650060 149650064 LFA1 TRANSFAC yes 66868361
chr5 149650060 149650064 LFA1 TRANSFAC yes 70738215
SNP sites on vista49642[chr5:149649694-149650062]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr5 149649716 rs73268732 C A no 8613525
chr5 149649739 rs577152169 T C no 8613526
chr5 149649753 rs4958443 G A no 8613527
chr5 149649760 rs13354672 A G no 8613528
chr5 149649866 rs138091828 G A no 8613529
chr5 149649872 rs142627619 G T
GSC GSC2 OTX1 PITX3
8613530
chr5 149649935 rs187800628 T A
FOXC1 FOXC2 FOXG1 FOXO3 FOXP2 POU4F1 SRY
8613531
chr5 149649978 rs138650549 C G
FOXI1
8613532
chr5 149650057 rs141685157 G T
HIC2 MAZ REST SP1
8613533
Genes possibly regulated by vista49642[chr5:149649694-149650062]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr5 149569520 149602351 + SLC6A7 ENSG00000011083.4 149569520 0.99 0.99 5876 19826
chr5 149599054 149669854 - CAMK2A ENSG00000070808.11 149669854 0.88 0.97 5877 80208
chr5 149675906 149718870 - ARSI ENSG00000183876.8 149718870 0.87 0.91 5878 31192
chr5 149737202 149779871 + TCOF1 ENSG00000070814.13 149737202 0.72 1.0 5879 12860
Expression level of Genes
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miRNAs possibly regulated by vista49642[chr5:149649694-149650062]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results