EnhancerDB
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  3. vista50153[chr5:172127299-172127478]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista50153[chr5:172127299-172127478]
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Tissue distribution of vista50153
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Transcription factor that possibly regulate vista50153[chr5:172127299-172127478]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr5 172127369 172127381 IRF1 JASPAR yes 67815451
chr5 172127369 172127381 IRF1 JASPAR yes 70762049
chr5 172127374 172127386 PKNOX1 JASPAR yes 67815452
chr5 172127374 172127386 PKNOX2 JASPAR yes 67815453
chr5 172127374 172127386 TGIF1 JASPAR yes 67815454
chr5 172127374 172127386 TGIF2 JASPAR yes 67815455
chr5 172127374 172127386 PKNOX1 JASPAR yes 70762050
chr5 172127374 172127386 PKNOX2 JASPAR yes 70762051
chr5 172127374 172127386 TGIF1 JASPAR yes 70762052
chr5 172127374 172127386 TGIF2 JASPAR yes 70762053
chr5 172127375 172127385 MSC JASPAR yes 67815456
chr5 172127375 172127385 MYF6 JASPAR yes 67815457
chr5 172127375 172127385 MSC JASPAR yes 70762054
chr5 172127375 172127385 MYF6 JASPAR yes 70762055
chr5 172127378 172127391 SMAD2 JASPAR yes 67815458
chr5 172127378 172127391 SMAD2 JASPAR yes 70762056
chr5 172127386 172127407 ZNF263 JASPAR yes 67815459
chr5 172127386 172127407 ZNF263 JASPAR yes 70762057
chr5 172127388 172127398 SP1 JASPAR yes 67815460
chr5 172127388 172127398 SP1 JASPAR yes 70762058
chr5 172127389 172127401 ZBTB7A JASPAR yes 67815461
chr5 172127389 172127401 ZBTB7A JASPAR yes 70762059
chr5 172127390 172127395 SP1 TRANSFAC yes 67815462
chr5 172127390 172127395 SP1 TRANSFAC yes 70762060
chr5 172127397 172127403 SP1 TRANSFAC yes 67815463
chr5 172127397 172127403 SP1 TRANSFAC yes 70762061
chr5 172127397 172127407 SP1 JASPAR yes 67815464
chr5 172127397 172127407 SP1 JASPAR yes 70762062
chr5 172127429 172127435 SP1 TRANSFAC yes 67815465
chr5 172127429 172127435 SP1 TRANSFAC yes 70762063
chr5 172127429 172127439 SP1 JASPAR yes 67815466
chr5 172127429 172127439 SP1 JASPAR yes 70762064
chr5 172127433 172127445 ELF4 JASPAR yes 67815467
chr5 172127433 172127445 ELF4 JASPAR yes 70762065
chr5 172127434 172127442 EHF JASPAR yes 67815468
chr5 172127434 172127442 EHF JASPAR yes 70762066
chr5 172127441 172127446 GATA2 JASPAR yes 67815469
chr5 172127441 172127446 GATA2 JASPAR yes 70762067
chr5 172127450 172127461 TBX20 JASPAR yes 67815470
chr5 172127450 172127461 TBX20 JASPAR yes 70762068
chr5 172127478 172127486 TEAD3 JASPAR yes 67815471
chr5 172127478 172127486 TEAD3 JASPAR yes 70762069
SNP sites on vista50153[chr5:172127299-172127478]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr5 172127304 rs792691 G A no 8703677
chr5 172127370 rs792692 A G
IRF1
8703678
chr5 172127461 rs546568053 G T
TBX20
8703679
Genes possibly regulated by vista50153[chr5:172127299-172127478]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr5 172036245 172036436 - AC027309.1 ENSG00000268553.1 172036436 0.0 0.0 5983 9137
chr5 172068269 172118543 + NEURL1B ENSG00000214357.4 172068269 0.78 1.0 5984 40970
chr5 172195093 172198198 - DUSP1 ENSG00000120129.5 172198198 0.79 1.0 5985 29280
Expression level of Genes
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miRNAs possibly regulated by vista50153[chr5:172127299-172127478]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr5 172089225 172089245 + hsa-miR-5003-3p MIMAT0021026 172068273 1.6916466488479886e-05 0.916667 0.0 1343
Expression level of miRNAs
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