EnhancerDB
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  3. vista50380[chr5:179465387-179465429]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista50380[chr5:179465387-179465429]
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Tissue distribution of vista50380
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Transcription factor that possibly regulate vista50380[chr5:179465387-179465429]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr5 179465400 179465421 IRF1 JASPAR yes 70773513
chr5 179465402 179465417 STAT2 JASPAR yes 70773514
chr5 179465404 179465416 IRF1 JASPAR yes 70773515
chr5 179465405 179465426 IRF1 JASPAR yes 70773516
chr5 179465406 179465412 TCF4 TRANSFAC yes 70773517
chr5 179465406 179465421 FOXP1 JASPAR yes 70773518
chr5 179465406 179465427 IRF1 JASPAR yes 70773519
chr5 179465407 179465418 FOXP2 JASPAR yes 70773520
chr5 179465407 179465419 FOXC2 JASPAR yes 70773521
chr5 179465407 179465422 STAT2 JASPAR yes 70773522
chr5 179465408 179465423 FOXP1 JASPAR yes 70773523
chr5 179465410 179465425 FOXP1 JASPAR yes 70773524
chr5 179465411 179465426 FOXP1 JASPAR yes 70773525
chr5 179465412 179465427 FOXP1 JASPAR yes 70773526
chr5 179465412 179465427 MEF2C JASPAR yes 70773527
chr5 179465414 179465429 FOXP1 JASPAR yes 70773528
chr5 179465421 179465425 YY1 TRANSFAC yes 70773529
SNP sites on vista50380[chr5:179465387-179465429]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr5 179465390 rs376909280 GAA G no 8746891
chr5 179465401 rs563017189 A G
IRF1
8746892
chr5 179465410 rs59240958 TG T
FOXC2 FOXP1 FOXP2 IRF1 STAT2 TCF4
8746893
chr5 179465411 rs6881735 G T
FOXC2 FOXP1 FOXP2 IRF1 STAT2 TCF4
8746894
Genes possibly regulated by vista50380[chr5:179465387-179465429]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr5 179338651 179499118 - RNF130 ENSG00000113269.9 179499118 0.72 1.0 6073 66311
Expression level of Genes
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miRNAs possibly regulated by vista50380[chr5:179465387-179465429]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results