EnhancerDB
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  3. vista50400[chr5:179967202-179967410]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista50400[chr5:179967202-179967410]
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Tissue distribution of vista50400
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Transcription factor that possibly regulate vista50400[chr5:179967202-179967410]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr5 179967213 179967225 HNF1B JASPAR yes 70774346
chr5 179967230 179967235 GATA2 JASPAR yes 70774347
chr5 179967263 179967273 REL JASPAR yes 70774348
chr5 179967283 179967296 NFKB1 JASPAR yes 70774349
chr5 179967283 179967304 IRF1 JASPAR yes 70774350
chr5 179967284 179967294 RELA JASPAR yes 70774351
chr5 179967285 179967296 NFKB1 JASPAR yes 70774352
chr5 179967285 179967300 PRDM1 JASPAR yes 70774353
chr5 179967285 179967300 STAT2 JASPAR yes 70774354
chr5 179967286 179967300 STAT1 JASPAR yes 70774355
chr5 179967307 179967311 YY1 TRANSFAC yes 70774356
chr5 179967311 179967317 HiNF-A TRANSFAC yes 70774357
chr5 179967314 179967327 POU2F2 JASPAR yes 70774358
chr5 179967314 179967328 POU1F1 JASPAR yes 70774359
chr5 179967315 179967326 FOXB1 JASPAR yes 70774360
chr5 179967315 179967327 POU3F1 JASPAR yes 70774361
chr5 179967315 179967327 POU3F2 JASPAR yes 70774362
chr5 179967315 179967328 POU3F3 JASPAR yes 70774363
chr5 179967316 179967320 YY1 TRANSFAC yes 70774364
chr5 179967317 179967326 POU3F4 JASPAR yes 70774365
chr5 179967317 179967326 POU5F1B JASPAR yes 70774366
chr5 179967322 179967326 YY1 TRANSFAC yes 70774367
chr5 179967326 179967337 PROP1 JASPAR yes 70774368
chr5 179967333 179967347 ONECUT3 JASPAR yes 70774369
chr5 179967345 179967355 RORA JASPAR yes 70774370
chr5 179967350 179967354 ESR1 TRANSFAC yes 70774371
chr5 179967357 179967364 NKX3-1 JASPAR yes 70774372
chr5 179967372 179967376 YY1 TRANSFAC yes 70774373
chr5 179967377 179967388 CDX2 JASPAR yes 70774374
chr5 179967378 179967389 HOXC11 JASPAR yes 70774375
chr5 179967378 179967389 HOXC13 JASPAR yes 70774376
chr5 179967378 179967389 HOXD12 JASPAR yes 70774377
chr5 179967379 179967388 CDX1 JASPAR yes 70774378
chr5 179967379 179967389 HOXA13 JASPAR yes 70774379
chr5 179967379 179967389 HOXC10 JASPAR yes 70774380
chr5 179967379 179967389 HOXD13 JASPAR yes 70774381
SNP sites on vista50400[chr5:179967202-179967410]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr5 179967386 rs73363236 A G
CDX1 CDX2 HOXA13 HOXC10 HOXC11 HOXC13 HOXD12 HOXD13
8749289
Genes possibly regulated by vista50400[chr5:179967202-179967410]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr5 179921412 180005405 + CNOT6 ENSG00000113300.7 179921412 0.79 0.99 6077 54210
chr5 180017103 180018540 - SCGB3A1 ENSG00000161055.3 180018540 0.99 0.94 6078 48870
Expression level of Genes
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miRNAs possibly regulated by vista50400[chr5:179967202-179967410]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results