EnhancerDB
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  3. vista50423[chr5:180615428-180615595]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista50423[chr5:180615428-180615595]
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Tissue distribution of vista50423
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Transcription factor that possibly regulate vista50423[chr5:180615428-180615595]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr5 180615243 180616164 RPC155 UCSC Txn Factor no Conserved 108537807
chr5 180615243 180616164 RPC155 UCSC Txn Factor no Conserved 108537808
chr5 180615251 180616161 ATF3 UCSC Txn Factor no Conserved 108537809
chr5 180615251 180616161 ATF3 UCSC Txn Factor no Conserved 108537810
chr5 180615336 180616169 TBP UCSC Txn Factor no Conserved 108537811
chr5 180615336 180616169 TBP UCSC Txn Factor no Conserved 108537812
chr5 180615344 180615639 RUNX3 UCSC Txn Factor no Conserved 108537813
chr5 180615412 180615638 BDP1 UCSC Txn Factor no Conserved 108537814
chr5 180615426 180615779 BHLHE40 UCSC Txn Factor no Conserved 108537815
chr5 180615481 180615487 ETS1 JASPAR yes 68239681
chr5 180615481 180615487 ETS1 JASPAR yes 70775429
chr5 180615482 180615492 RELA JASPAR yes 68239682
chr5 180615482 180615492 RELA JASPAR yes 70775430
chr5 180615483 180615495 IRF1 JASPAR yes 68239683
chr5 180615483 180615495 IRF1 JASPAR yes 70775431
chr5 180615484 180615499 RUNX2 JASPAR yes 68239684
chr5 180615484 180615499 RUNX2 JASPAR yes 70775432
chr5 180615488 180615496 TBX5 JASPAR yes 68239685
chr5 180615488 180615496 TBX5 JASPAR yes 70775433
chr5 180615499 180615512 ZBED1 JASPAR yes 68239686
chr5 180615499 180615512 ZBED1 JASPAR yes 70775434
chr5 180615500 180615504 NFE TRANSFAC yes 68239687
chr5 180615500 180615504 NFE TRANSFAC yes 70775435
chr5 180615543 180615556 SCRT2 JASPAR yes 68239688
chr5 180615543 180615556 SCRT2 JASPAR yes 70775436
chr5 180615570 180615581 NFKB1 JASPAR yes 68239689
chr5 180615570 180615581 NFKB1 JASPAR yes 70775437
chr5 180615571 180615581 NFKB1 JASPAR yes 68239690
chr5 180615571 180615581 NFKB1 JASPAR yes 70775438
chr5 180615573 180615589 GLIS1 JASPAR yes 68239691
chr5 180615573 180615589 GLIS1 JASPAR yes 70775439
chr5 180615574 180615588 GLIS2 JASPAR yes 68239692
chr5 180615574 180615588 GLIS3 JASPAR yes 68239693
chr5 180615574 180615588 GLIS2 JASPAR yes 70775440
chr5 180615574 180615588 GLIS3 JASPAR yes 70775441
SNP sites on vista50423[chr5:180615428-180615595]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr5 180615432 rs116490580 C T
ATF3 BDP1 BHLHE40 RPC155 RUNX3 TBP
8752430
chr5 180615439 rs116406069 G A,T
ATF3 BDP1 BHLHE40 RPC155 RUNX3 TBP
8752431
chr5 180615452 rs559277769 T A,C
ATF3 BDP1 BHLHE40 RPC155 RUNX3 TBP
8752432
chr5 180615456 rs528514071 A G,T
ATF3 BDP1 BHLHE40 RPC155 RUNX3 TBP
8752433
chr5 180615461 rs143612284 A C
ATF3 BDP1 BHLHE40 RPC155 RUNX3 TBP
8752434
chr5 180615465 rs181161759 T C
ATF3 BDP1 BHLHE40 RPC155 RUNX3 TBP
8752435
chr5 180615471 rs535486458 C T
ATF3 BDP1 BHLHE40 RPC155 RUNX3 TBP
8752436
chr5 180615482 rs184577859 C T
ATF3 BDP1 BHLHE40 ETS1 RELA RPC155 RUNX3 TBP
8752437
chr5 180615498 rs11956045 C A,G,T
ATF3 BDP1 BHLHE40 RPC155 RUNX2 RUNX3 TBP
8752438
chr5 180615500 rs543106131 T A,C,G
ATF3 BDP1 BHLHE40 NFE RPC155 RUNX3 TBP ZBED1
8752439
chr5 180615501 rs559463560 C T
ATF3 BDP1 BHLHE40 NFE RPC155 RUNX3 TBP ZBED1
8752440
chr5 180615505 rs144685159 C A,T
ATF3 BDP1 BHLHE40 RPC155 RUNX3 TBP ZBED1
8752441
chr5 180615509 rs73357352 A C
ATF3 BDP1 BHLHE40 RPC155 RUNX3 TBP ZBED1
8752442
chr5 180615524 rs367664071 A C
ATF3 BDP1 BHLHE40 RPC155 RUNX3 TBP
8752443
Genes possibly regulated by vista50423[chr5:180615428-180615595]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr5 180551357 180552304 - OR2V1 ENSG00000185372.2 180552304 0.97 1.0 6086 36876
chr5 180581943 180582890 + OR2V2 ENSG00000182613.1 180581943 1.0 1.0 6087 66515
chr5 180620924 180632293 - TRIM7 ENSG00000146054.13 180632293 0.92 1.0 6088 83302
chr5 180649499 180662809 + TRIM41 ENSG00000146063.14 180649499 0.68 1.0 6089 66096
chr5 180663909 180675096 - GNB2L1 ENSG00000204628.7 180675096 0.76 1.0 6090 40499
chr5 180681417 180688119 - TRIM52 ENSG00000183718.4 180688119 0.69 0.99 6091 27476
chr5 180682720 180684578 + AC008443.1 ENSG00000268397.1 180682720 0.93 1.0 6092 32875
Expression level of Genes
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miRNAs possibly regulated by vista50423[chr5:180615428-180615595]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results