EnhancerDB
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  3. vista50424[chr5:180615864-180616079]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista50424[chr5:180615864-180616079]
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Tissue distribution of vista50424
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Transcription factor that possibly regulate vista50424[chr5:180615864-180616079]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr5 180615243 180616164 RPC155 UCSC Txn Factor no Conserved 108537807
chr5 180615243 180616164 RPC155 UCSC Txn Factor no Conserved 108537808
chr5 180615251 180616161 ATF3 UCSC Txn Factor no Conserved 108537809
chr5 180615251 180616161 ATF3 UCSC Txn Factor no Conserved 108537810
chr5 180615336 180616169 TBP UCSC Txn Factor no Conserved 108537811
chr5 180615336 180616169 TBP UCSC Txn Factor no Conserved 108537812
chr5 180615846 180616087 BDP1 UCSC Txn Factor no Conserved 108537816
chr5 180615853 180615872 REST JASPAR yes 68239749
chr5 180615853 180615872 REST JASPAR yes 70775442
chr5 180615889 180615903 IRF7 JASPAR yes 68239750
chr5 180615889 180615903 IRF7 JASPAR yes 70775443
chr5 180615911 180615929 NFYA JASPAR yes 68239751
chr5 180615911 180615929 NFYA JASPAR yes 70775444
chr5 180615927 180615931 NFE TRANSFAC yes 68239752
chr5 180615927 180615931 NFE TRANSFAC yes 70775445
chr5 180615965 180615982 PAX9 JASPAR yes 68239753
chr5 180615965 180615982 PAX9 JASPAR yes 70775446
chr5 180615988 180615993 SP1 TRANSFAC yes 68239754
chr5 180615988 180615993 SP1 TRANSFAC yes 70775447
chr5 180615990 180616000 REL JASPAR yes 68239755
chr5 180615990 180616000 REL JASPAR yes 70775448
chr5 180615993 180615998 H4TF1 TRANSFAC yes 68239756
chr5 180615993 180615998 H4TF1 TRANSFAC yes 70775449
chr5 180615995 180616001 ETS1 JASPAR yes 68239757
chr5 180615995 180616001 ETS1 JASPAR yes 70775450
chr5 180615998 180616011 SMAD2 JASPAR yes 68239758
chr5 180615998 180616011 SMAD2 JASPAR yes 70775451
chr5 180616022 180616033 ESRRB JASPAR yes 68239759
chr5 180616022 180616033 ESRRB JASPAR yes 70775452
SNP sites on vista50424[chr5:180615864-180616079]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr5 180615926 rs115253869 G A,T
ATF3 BDP1 NFYA RPC155 TBP
8752457
chr5 180615927 rs254466 G A,C
ATF3 BDP1 NFE NFYA RPC155 TBP
8752458
chr5 180615933 rs254465 T A,C
ATF3 BDP1 RPC155 TBP
8752459
chr5 180615934 rs569677569 A G
ATF3 BDP1 RPC155 TBP
8752460
chr5 180615936 rs529889045 T C,G
ATF3 BDP1 RPC155 TBP
8752461
chr5 180615938 rs2546400 G A,C
ATF3 BDP1 RPC155 TBP
8752462
chr5 180615939 rs558986970 C A,G,T
ATF3 BDP1 RPC155 TBP
8752463
chr5 180615943 rs181562950 C G,T
ATF3 BDP1 RPC155 TBP
8752464
chr5 180615984 rs574889889 C T
ATF3 BDP1 RPC155 TBP
8752465
Genes possibly regulated by vista50424[chr5:180615864-180616079]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr5 180551357 180552304 - OR2V1 ENSG00000185372.2 180552304 0.97 1.0 6086 36440
chr5 180581943 180582890 + OR2V2 ENSG00000182613.1 180581943 1.0 1.0 6087 66079
chr5 180620924 180632293 - TRIM7 ENSG00000146054.13 180632293 0.92 1.0 6088 83786
chr5 180649499 180662809 + TRIM41 ENSG00000146063.14 180649499 0.68 1.0 6089 66580
chr5 180663909 180675096 - GNB2L1 ENSG00000204628.7 180675096 0.76 1.0 6090 40983
chr5 180681417 180688119 - TRIM52 ENSG00000183718.4 180688119 0.69 0.99 6091 27960
chr5 180682720 180684578 + AC008443.1 ENSG00000268397.1 180682720 0.93 1.0 6092 33359
Expression level of Genes
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miRNAs possibly regulated by vista50424[chr5:180615864-180616079]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results