EnhancerDB
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  3. vista50890[chr6:12242168-12242480]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista50890[chr6:12242168-12242480]
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Tissue distribution of vista50890
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Transcription factor that possibly regulate vista50890[chr6:12242168-12242480]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr6 12242159 12242173 MTF1 JASPAR yes 70312512
chr6 12242159 12242173 MTF1 JASPAR yes 99953987
chr6 12242184 12242199 STAT1 JASPAR yes 70312513
chr6 12242184 12242199 STAT1 JASPAR yes 99953988
chr6 12242185 12242203 SRF JASPAR yes 70312514
chr6 12242185 12242203 SRF JASPAR yes 99953989
chr6 12242186 12242197 STAT1 JASPAR yes 70312515
chr6 12242186 12242197 STAT3 JASPAR yes 70312516
chr6 12242186 12242197 STAT1 JASPAR yes 99953990
chr6 12242186 12242197 STAT3 JASPAR yes 99953991
chr6 12242187 12242198 CDX2 JASPAR yes 70312517
chr6 12242187 12242198 CDX2 JASPAR yes 99953992
chr6 12242187 12242203 SRF JASPAR yes 70312518
chr6 12242187 12242203 SRF JASPAR yes 99953993
chr6 12242188 12242200 SRF JASPAR yes 70312519
chr6 12242188 12242200 SRF JASPAR yes 99953994
chr6 12242189 12242198 CDX1 JASPAR yes 70312520
chr6 12242189 12242198 CDX1 JASPAR yes 99953995
chr6 12242189 12242199 HOXA13 JASPAR yes 70312521
chr6 12242189 12242199 HOXB13 JASPAR yes 70312522
chr6 12242189 12242199 HOXD13 JASPAR yes 70312523
chr6 12242189 12242199 HOXA13 JASPAR yes 99953996
chr6 12242189 12242199 HOXB13 JASPAR yes 99953997
chr6 12242189 12242199 HOXD13 JASPAR yes 99953998
chr6 12242197 12242209 TFAP2A JASPAR yes 70312524
chr6 12242197 12242209 TFAP2A JASPAR yes 99953999
chr6 12242198 12242210 INSM1 JASPAR yes 70312525
chr6 12242198 12242210 INSM1 JASPAR yes 99954000
chr6 12242205 12242210 ETS2 TRANSFAC yes 70312526
chr6 12242205 12242210 ETS2 TRANSFAC yes 99954001
chr6 12242208 12242213 ETS2 TRANSFAC yes 70312527
chr6 12242208 12242213 ETS2 TRANSFAC yes 99954002
chr6 12242208 12242216 FEV JASPAR yes 70312528
chr6 12242208 12242216 FEV JASPAR yes 99954003
chr6 12242209 12242216 SPI1 JASPAR yes 70312529
chr6 12242209 12242216 SPI1 JASPAR yes 99954004
chr6 12242209 12242223 STAT1 JASPAR yes 70312530
chr6 12242209 12242223 STAT1 JASPAR yes 99954005
chr6 12242216 12242230 RXRB JASPAR yes 70312531
chr6 12242216 12242230 RXRG JASPAR yes 70312532
chr6 12242216 12242230 RXRB JASPAR yes 99954006
chr6 12242216 12242230 RXRG JASPAR yes 99954007
chr6 12242223 12242226 MYB TRANSFAC yes 70312533
chr6 12242223 12242226 MYB TRANSFAC yes 99954008
chr6 12242229 12242241 HLF JASPAR yes 70312534
chr6 12242229 12242241 HLF JASPAR yes 99954009
chr6 12242241 12242258 PAX1 JASPAR yes 70312535
chr6 12242241 12242258 PAX1 JASPAR yes 99954010
chr6 12242248 12242252 YY1 TRANSFAC yes 70312536
chr6 12242248 12242252 YY1 TRANSFAC yes 99954011
chr6 12242251 12242262 PHOX2A JASPAR yes 70312537
chr6 12242251 12242262 PROP1 JASPAR yes 70312538
chr6 12242251 12242262 PHOX2A JASPAR yes 99954012
chr6 12242251 12242262 PROP1 JASPAR yes 99954013
chr6 12242266 12242280 SPI1 JASPAR yes 70312539
chr6 12242266 12242280 SPIC JASPAR yes 70312540
chr6 12242266 12242280 SPI1 JASPAR yes 99954014
chr6 12242266 12242280 SPIC JASPAR yes 99954015
chr6 12242271 12242279 EHF JASPAR yes 70312541
chr6 12242271 12242279 EHF JASPAR yes 99954016
chr6 12242271 12242284 ELF1 JASPAR yes 70312542
chr6 12242271 12242284 ELF1 JASPAR yes 99954017
chr6 12242275 12242280 ETS2 TRANSFAC yes 70312543
chr6 12242275 12242280 ETS2 TRANSFAC yes 99954018
chr6 12242300 12242308 FEV JASPAR yes 70312544
chr6 12242300 12242308 FEV JASPAR yes 99954019
chr6 12242317 12242324 SPIB JASPAR yes 70312545
chr6 12242317 12242324 SPIB JASPAR yes 99954020
chr6 12242322 12242328 TCF4 TRANSFAC yes 70312546
chr6 12242322 12242328 TCF4 TRANSFAC yes 99954021
chr6 12242328 12242334 TCF4 TRANSFAC yes 70312547
chr6 12242328 12242334 TCF4 TRANSFAC yes 99954022
chr6 12242330 12242340 MSC JASPAR yes 70312548
chr6 12242330 12242340 MSC JASPAR yes 99954023
chr6 12242341 12242351 ETV3 JASPAR yes 70312549
chr6 12242341 12242351 ETV3 JASPAR yes 99954024
chr6 12242346 12242355 ZEB1 JASPAR yes 70312550
chr6 12242346 12242355 ZEB1 JASPAR yes 99954025
chr6 12242353 12242366 ELF1 JASPAR yes 70312551
chr6 12242353 12242366 ELF1 JASPAR yes 99954026
chr6 12242354 12242366 ELF1 JASPAR yes 70312552
chr6 12242354 12242366 ELF4 JASPAR yes 70312553
chr6 12242354 12242366 ELF1 JASPAR yes 99954027
chr6 12242354 12242366 ELF4 JASPAR yes 99954028
chr6 12242356 12242363 ETS1 TRANSFAC yes 70312554
chr6 12242356 12242363 ETS1 TRANSFAC yes 99954029
chr6 12242356 12242367 FLI1 JASPAR yes 70312555
chr6 12242356 12242367 FLI1 JASPAR yes 99954030
chr6 12242369 12242379 RELA JASPAR yes 70312556
chr6 12242369 12242379 REL JASPAR yes 70312557
chr6 12242369 12242379 RELA JASPAR yes 99954031
chr6 12242369 12242379 REL JASPAR yes 99954032
chr6 12242369 12242380 NFKB1 JASPAR yes 70312558
chr6 12242369 12242380 NFKB1 JASPAR yes 99954033
chr6 12242370 12242380 NFKB1 JASPAR yes 70312559
chr6 12242370 12242380 NFKB1 JASPAR yes 99954034
chr6 12242375 12242380 ETS2 TRANSFAC yes 70312560
chr6 12242375 12242380 ETS2 TRANSFAC yes 99954035
chr6 12242415 12242429 EBF1 JASPAR yes 70312561
chr6 12242415 12242429 EBF1 JASPAR yes 99954036
chr6 12242416 12242427 EBF1 JASPAR yes 70312562
chr6 12242416 12242427 EBF1 JASPAR yes 99954037
chr6 12242456 12242466 HOXD11 JASPAR yes 70312563
chr6 12242456 12242466 HOXD11 JASPAR yes 99954038
chr6 12242456 12242467 HOXC11 JASPAR yes 70312564
chr6 12242456 12242467 HOXC12 JASPAR yes 70312565
chr6 12242456 12242467 HOXC13 JASPAR yes 70312566
chr6 12242456 12242467 HOXC11 JASPAR yes 99954039
chr6 12242456 12242467 HOXC12 JASPAR yes 99954040
chr6 12242456 12242467 HOXC13 JASPAR yes 99954041
chr6 12242461 12242473 GRHL1 JASPAR yes 70312567
chr6 12242461 12242473 GRHL1 JASPAR yes 99954042
chr6 12242462 12242472 TFCP2 JASPAR yes 70312568
chr6 12242462 12242472 TFCP2 JASPAR yes 99954043
chr6 12242474 12242487 POU3F3 JASPAR yes 70312569
chr6 12242474 12242487 POU3F3 JASPAR yes 99954044
SNP sites on vista50890[chr6:12242168-12242480]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr6 12242199 rs74591550 G C
HOXA13 HOXB13 HOXD13 INSM1 SRF STAT1 TFAP2A
8837179
chr6 12242397 rs10947862 A T no 8837180
chr6 12242417 rs369022275 GTC G
EBF1
8837181
chr6 12242417 rs71764521 GTC G
EBF1
8837182
Genes possibly regulated by vista50890[chr6:12242168-12242480]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr6 12290596 12297427 + EDN1 ENSG00000078401.6 12290596 0.91 0.93 6163 51884
Expression level of Genes
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miRNAs possibly regulated by vista50890[chr6:12242168-12242480]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results