EnhancerDB
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  3. vista51409[chr6:26233560-26233958]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista51409[chr6:26233560-26233958]
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Tissue distribution of vista51409
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Transcription factor that possibly regulate vista51409[chr6:26233560-26233958]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr6 26230623 26235636 POLR2A UCSC Txn Factor no Conserved 108539173
chr6 26230623 26235636 POLR2A UCSC Txn Factor no Conserved 108539174
chr6 26233139 26235297 TAF7 UCSC Txn Factor no Conserved 108539175
chr6 26233139 26235297 TAF7 UCSC Txn Factor no Conserved 108539176
chr6 26233251 26233917 E2F1 UCSC Txn Factor no Conserved 108539177
chr6 26233251 26233917 E2F1 UCSC Txn Factor no Conserved 108539178
chr6 26233599 26235282 CHD1 UCSC Txn Factor no Conserved 108539179
chr6 26233696 26235290 POU2F2 UCSC Txn Factor no Conserved 108539180
chr6 26233859 26235387 PML UCSC Txn Factor no Conserved 108539181
chr6 26233888 26234235 NR3C1 UCSC Txn Factor no Conserved 108539182
chr6 26233573 26233589 E2F2 JASPAR yes 70338129
chr6 26233577 26233581 LFA1 TRANSFAC yes 70338130
chr6 26233585 26233600 MEF2A JASPAR yes 70338131
chr6 26233586 26233601 MEF2C JASPAR yes 70338132
chr6 26233587 26233599 MEF2A JASPAR yes 70338133
chr6 26233587 26233599 MEF2D JASPAR yes 70338134
chr6 26233589 26233593 YY1 TRANSFAC yes 70338135
chr6 26233611 26233615 NFE TRANSFAC yes 70338136
chr6 26233611 26233618 GATA1 TRANSFAC yes 70338137
chr6 26233630 26233648 E2F3 JASPAR yes 70338138
chr6 26233653 26233663 HINFP JASPAR yes 70338139
chr6 26233653 26233664 ELK4 JASPAR yes 70338140
chr6 26233653 26233664 FLI1 JASPAR yes 70338141
chr6 26233653 26233666 ELF3 JASPAR yes 70338142
chr6 26233654 26233664 ELK1 JASPAR yes 70338143
chr6 26233654 26233664 ETV6 JASPAR yes 70338144
chr6 26233654 26233665 ELF5 JASPAR yes 70338145
chr6 26233654 26233666 EHF JASPAR yes 70338146
chr6 26233654 26233666 ELF1 JASPAR yes 70338147
chr6 26233654 26233666 ELF4 JASPAR yes 70338148
chr6 26233654 26233667 ELF1 JASPAR yes 70338149
chr6 26233654 26233668 SPI1 JASPAR yes 70338150
chr6 26233656 26233662 ETS1 JASPAR yes 70338151
chr6 26233656 26233662 SPI1 JASPAR yes 70338152
chr6 26233657 26233667 MZF1 JASPAR yes 70338153
chr6 26233725 26233744 PAX5 JASPAR yes 70338154
chr6 26233746 26233750 YY1 TRANSFAC yes 70338155
chr6 26233747 26233762 MEF2C JASPAR yes 70338156
chr6 26233765 26233778 NFKB1 JASPAR yes 70338157
chr6 26233765 26233778 NFKB2 JASPAR yes 70338158
chr6 26233766 26233776 NFKB1 JASPAR yes 70338159
chr6 26233770 26233785 AR JASPAR yes 70338160
chr6 26233793 26233811 RARA JASPAR yes 70338161
chr6 26233800 26233813 NR2F1 JASPAR yes 70338162
chr6 26233804 26233821 RARA JASPAR yes 70338163
chr6 26233804 26233821 RXRA JASPAR yes 70338164
chr6 26233818 26233824 SP1 TRANSFAC yes 70338165
chr6 26233818 26233828 SP1 JASPAR yes 70338166
chr6 26233819 26233833 PLAG1 JASPAR yes 70338167
chr6 26233827 26233841 GLIS3 JASPAR yes 70338168
chr6 26233887 26233898 FOXB1 JASPAR yes 70338169
chr6 26233888 26233892 YY1 TRANSFAC yes 70338170
chr6 26233917 26233922 GATA2 JASPAR yes 70338171
SNP sites on vista51409[chr6:26233560-26233958]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr6 26233610 rs77337633 T C
CHD1 E2F1 POLR2A TAF7
8927253
chr6 26233819 rs111534271 C G
CHD1 E2F1 PLAG1 POLR2A POU2F2 RARA RXRA SP1 TAF7
8927254
chr6 26233842 rs535477004 C T
CHD1 E2F1 POLR2A POU2F2 TAF7
8927255
chr6 26233882 rs80202565 C G
CHD1 E2F1 PML POLR2A POU2F2 TAF7
8927256
chr6 26233887 rs537743247 A G
CHD1 E2F1 FOXB1 PML POLR2A POU2F2 TAF7
8927257
chr6 26233906 rs147776806 C T
CHD1 E2F1 NR3C1 PML POLR2A POU2F2 TAF7
8927258
chr6 26233908 rs112026104 T C
CHD1 E2F1 NR3C1 PML POLR2A POU2F2 TAF7
8927259
chr6 26233945 rs149854042 C T
CHD1 NR3C1 PML POLR2A POU2F2 TAF7
8927260
chr6 26233957 rs547426076 C CA
CHD1 NR3C1 PML POLR2A POU2F2 TAF7
8927261
Genes possibly regulated by vista51409[chr6:26233560-26233958]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr6 26156559 26157343 + HIST1H1E ENSG00000168298.4 26156559 0.97 0.89 6234 22999
chr6 26158349 26171577 + HIST1H2BD ENSG00000158373.7 26158349 0.92 0.84 6235 24789
chr6 26183958 26184454 + HIST1H2BE ENSG00000197697.3 26183958 0.86 0.96 6236 50398
chr6 26188938 26189304 - HIST1H4D ENSG00000188987.2 26189304 0.9 0.96 6237 55744
chr6 26197068 26199521 - HIST1H3D ENSG00000197409.6 26199521 0.91 0.9 6238 65961
chr6 26199079 26199471 - HIST1H2AD ENSG00000196866.2 26199471 0.96 0.93 6239 65911
chr6 26199748 26200942 + HIST1H2BF ENSG00000197846.3 26199748 0.9 0.92 6240 66188
chr6 26204858 26206266 + HIST1H4E ENSG00000198518.5 26204858 0.91 0.82 6241 71298
chr6 26216428 26216872 - HIST1H2BG ENSG00000187990.4 26216872 0.97 0.86 6242 83312
chr6 26217165 26217711 + HIST1H2AE ENSG00000168274.3 26217165 0.88 0.83 6243 83605
chr6 26225383 26225844 + HIST1H3E ENSG00000196966.3 26225383 0.97 0.98 6244 91823
chr6 26234440 26235216 - HIST1H1D ENSG00000124575.5 26235216 0.99 0.91 6245 98742
chr6 26240561 26240976 + HIST1H4F ENSG00000198327.3 26240561 0.92 1.0 6246 93397
chr6 26246886 26247259 - HIST1H4G ENSG00000124578.4 26247259 1.0 0.0 6247 86699
chr6 26250370 26250835 - HIST1H3F ENSG00000256316.1 26250835 0.95 0.94 6248 83123
chr6 26251879 26252303 + HIST1H2BH ENSG00000197459.2 26251879 0.88 0.89 6249 82079
chr6 26271146 26271612 - HIST1H3G ENSG00000256018.1 26271612 0.87 0.99 6250 62346
chr6 26273144 26273622 + HIST1H2BI ENSG00000168242.3 26273144 0.85 0.99 6251 60814
chr6 26281283 26285762 - HIST1H4H ENSG00000158406.2 26285762 0.88 0.91 6252 48196
Expression level of Genes
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miRNAs possibly regulated by vista51409[chr6:26233560-26233958]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results