EnhancerDB
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  3. vista51458[chr6:27798416-27798741]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista51458[chr6:27798416-27798741]
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Tissue distribution of vista51458
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Transcription factor that possibly regulate vista51458[chr6:27798416-27798741]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr6 27796958 27799740 POLR2A UCSC Txn Factor no Conserved 108539356
chr6 27798351 27799611 KDM5B UCSC Txn Factor no Conserved 108539357
chr6 27798439 27798444 MYC TRANSFAC yes 70340193
chr6 27798439 27798444 MYC TRANSFAC yes 100951567
chr6 27798465 27798469 TEAD2 TRANSFAC yes 70340194
chr6 27798465 27798469 TEAD2 TRANSFAC yes 100951568
chr6 27798467 27798470 MYB TRANSFAC yes 70340195
chr6 27798467 27798470 MYB TRANSFAC yes 100951569
chr6 27798474 27798484 RELA JASPAR yes 70340196
chr6 27798474 27798484 RELA JASPAR yes 100951570
chr6 27798484 27798490 MZF1 JASPAR yes 70340197
chr6 27798484 27798490 MZF1 JASPAR yes 100951571
chr6 27798499 27798517 E2F3 JASPAR yes 70340198
chr6 27798499 27798517 E2F3 JASPAR yes 100951572
chr6 27798500 27798516 E2F2 JASPAR yes 70340199
chr6 27798500 27798516 E2F2 JASPAR yes 100951573
chr6 27798504 27798516 INSM1 JASPAR yes 70340200
chr6 27798504 27798516 INSM1 JASPAR yes 100951574
chr6 27798518 27798521 MYB TRANSFAC yes 70340201
chr6 27798518 27798521 MYB TRANSFAC yes 100951575
chr6 27798522 27798525 MYB TRANSFAC yes 70340202
chr6 27798522 27798525 MYB TRANSFAC yes 100951576
chr6 27798522 27798536 NR2F1 JASPAR yes 70340203
chr6 27798522 27798536 NR2F1 JASPAR yes 100951577
chr6 27798557 27798568 FOSL2 JASPAR yes 70340204
chr6 27798557 27798568 FOSL2 JASPAR yes 100951578
chr6 27798582 27798586 YY1 TRANSFAC yes 70340205
chr6 27798582 27798586 YY1 TRANSFAC yes 100951579
chr6 27798610 27798625 IRF9 JASPAR yes 70340206
chr6 27798610 27798625 IRF9 JASPAR yes 100951580
chr6 27798611 27798625 IRF8 JASPAR yes 70340207
chr6 27798611 27798625 IRF8 JASPAR yes 100951581
chr6 27798612 27798617 GATA2 JASPAR yes 70340208
chr6 27798612 27798617 GATA2 JASPAR yes 100951582
chr6 27798612 27798626 STAT1 JASPAR yes 70340209
chr6 27798612 27798626 STAT1 JASPAR yes 100951583
chr6 27798612 27798627 STAT2 JASPAR yes 70340210
chr6 27798612 27798627 STAT2 JASPAR yes 100951584
chr6 27798612 27798630 IRF2 JASPAR yes 70340211
chr6 27798612 27798630 IRF2 JASPAR yes 100951585
chr6 27798613 27798625 IRF1 JASPAR yes 70340212
chr6 27798613 27798625 IRF1 JASPAR yes 100951586
chr6 27798633 27798639 HiNF-A TRANSFAC yes 70340213
chr6 27798633 27798639 HiNF-A TRANSFAC yes 100951587
chr6 27798653 27798663 NFATC3 JASPAR yes 70340214
chr6 27798653 27798663 NFATC3 JASPAR yes 100951588
chr6 27798655 27798662 NFATC2 JASPAR yes 70340215
chr6 27798655 27798662 NFATC2 JASPAR yes 100951589
chr6 27798657 27798672 HNF1A JASPAR yes 70340216
chr6 27798657 27798672 HNF1A JASPAR yes 100951590
chr6 27798661 27798671 EMX1 JASPAR yes 70340217
chr6 27798661 27798671 EMX2 JASPAR yes 70340218
chr6 27798661 27798671 ESX1 JASPAR yes 70340219
chr6 27798661 27798671 EVX1 JASPAR yes 70340220
chr6 27798661 27798671 EVX2 JASPAR yes 70340221
chr6 27798661 27798671 GBX2 JASPAR yes 70340222
chr6 27798661 27798671 HESX1 JASPAR yes 70340223
chr6 27798661 27798671 HOXA2 JASPAR yes 70340224
chr6 27798661 27798671 HOXB2 JASPAR yes 70340225
chr6 27798661 27798671 HOXB3 JASPAR yes 70340226
chr6 27798661 27798671 LHX2 JASPAR yes 70340227
chr6 27798661 27798671 LHX6 JASPAR yes 70340228
chr6 27798661 27798671 MEOX1 JASPAR yes 70340229
chr6 27798661 27798671 MEOX2 JASPAR yes 70340230
chr6 27798661 27798671 POU6F1 JASPAR yes 70340231
chr6 27798661 27798671 RAX JASPAR yes 70340232
chr6 27798661 27798671 EMX1 JASPAR yes 100951591
chr6 27798661 27798671 EMX2 JASPAR yes 100951592
chr6 27798661 27798671 ESX1 JASPAR yes 100951593
chr6 27798661 27798671 EVX1 JASPAR yes 100951594
chr6 27798661 27798671 EVX2 JASPAR yes 100951595
chr6 27798661 27798671 GBX2 JASPAR yes 100951596
chr6 27798661 27798671 HESX1 JASPAR yes 100951597
chr6 27798661 27798671 HOXA2 JASPAR yes 100951598
chr6 27798661 27798671 HOXB2 JASPAR yes 100951599
chr6 27798661 27798671 HOXB3 JASPAR yes 100951600
chr6 27798661 27798671 LHX2 JASPAR yes 100951601
chr6 27798661 27798671 LHX6 JASPAR yes 100951602
chr6 27798661 27798671 MEOX1 JASPAR yes 100951603
chr6 27798661 27798671 MEOX2 JASPAR yes 100951604
chr6 27798661 27798671 POU6F1 JASPAR yes 100951605
chr6 27798661 27798671 RAX JASPAR yes 100951606
chr6 27798662 27798670 LBX1 JASPAR yes 70340233
chr6 27798662 27798670 PDX1 JASPAR yes 70340234
chr6 27798662 27798670 VAX1 JASPAR yes 70340235
chr6 27798662 27798670 VAX2 JASPAR yes 70340236
chr6 27798662 27798670 VSX1 JASPAR yes 70340237
chr6 27798662 27798670 VSX2 JASPAR yes 70340238
chr6 27798662 27798670 LBX1 JASPAR yes 100951607
chr6 27798662 27798670 PDX1 JASPAR yes 100951608
chr6 27798662 27798670 VAX1 JASPAR yes 100951609
chr6 27798662 27798670 VAX2 JASPAR yes 100951610
chr6 27798662 27798670 VSX1 JASPAR yes 100951611
chr6 27798662 27798670 VSX2 JASPAR yes 100951612
chr6 27798662 27798672 POU6F2 JASPAR yes 70340239
chr6 27798662 27798672 POU6F2 JASPAR yes 100951613
chr6 27798678 27798690 ZBTB7B JASPAR yes 70340240
chr6 27798678 27798690 ZBTB7C JASPAR yes 70340241
chr6 27798678 27798690 ZBTB7B JASPAR yes 100951614
chr6 27798678 27798690 ZBTB7C JASPAR yes 100951615
chr6 27798679 27798691 ZBTB7A JASPAR yes 70340242
chr6 27798679 27798691 ZBTB7A JASPAR yes 100951616
chr6 27798681 27798686 SP1 TRANSFAC yes 70340243
chr6 27798681 27798686 SP1 TRANSFAC yes 100951617
chr6 27798683 27798694 E2F1 JASPAR yes 70340244
chr6 27798683 27798694 E2F1 JASPAR yes 100951618
chr6 27798684 27798695 E2F4 JASPAR yes 70340245
chr6 27798684 27798695 E2F4 JASPAR yes 100951619
chr6 27798708 27798726 ESR2 JASPAR yes 70340246
chr6 27798708 27798726 ESR2 JASPAR yes 100951620
chr6 27798721 27798734 JUN JASPAR yes 70340247
chr6 27798721 27798734 JUN JASPAR yes 100951621
chr6 27798727 27798738 NFE2L2 JASPAR yes 70340248
chr6 27798727 27798738 NFE2L2 JASPAR yes 100951622
SNP sites on vista51458[chr6:27798416-27798741]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr6 27798467 rs181691500 A G
KDM5B MYB POLR2A TEAD2
8934054
chr6 27798544 rs79168586 A G
KDM5B POLR2A
8934055
chr6 27798577 rs140263602 T C
KDM5B POLR2A
8934056
chr6 27798615 rs555963224 A AT
GATA2 IRF1 IRF2 IRF8 IRF9 KDM5B POLR2A STAT1 STAT2
8934057
chr6 27798663 rs368729796 ATAAT A
EMX1 EMX2 ESX1 EVX1 EVX2 GBX2 HESX1 HNF1A HOXA2 HOXB2 HOXB3 KDM5B LBX1 LHX2 LHX6 MEOX1 MEOX2 NFATC3 PDX1 POLR2A POU6F1 POU6F2 RAX VAX1 VAX2 VSX1 VSX2
8934058
chr6 27798663 rs563149438 ATAAT A
EMX1 EMX2 ESX1 EVX1 EVX2 GBX2 HESX1 HNF1A HOXA2 HOXB2 HOXB3 KDM5B LBX1 LHX2 LHX6 MEOX1 MEOX2 NFATC3 PDX1 POLR2A POU6F1 POU6F2 RAX VAX1 VAX2 VSX1 VSX2
8934059
chr6 27798687 rs557281284 G A,C
E2F1 E2F4 KDM5B POLR2A ZBTB7A ZBTB7B ZBTB7C
8934060
chr6 27798713 rs112156199 C T
ESR2 KDM5B POLR2A
8934061
chr6 27798724 rs141975446 CATG C
ESR2 JUN KDM5B POLR2A
8934062
chr6 27798724 rs375712130 CATG C
ESR2 JUN KDM5B POLR2A
8934063
Genes possibly regulated by vista51458[chr6:27798416-27798741]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr6 27775257 27775709 - HIST1H2BL ENSG00000185130.4 27775709 0.92 0.91 6271 77293
chr6 27775899 27776429 + HIST1H2AI ENSG00000196747.3 27775899 0.88 0.89 6272 77483
chr6 27777842 27778314 + HIST1H3H ENSG00000203813.4 27777842 0.84 0.89 6273 79426
chr6 27782112 27782607 - HIST1H2AJ ENSG00000182611.3 27782607 0.89 0.95 6274 84191
chr6 27782822 27783267 + HIST1H2BM ENSG00000196374.5 27782822 0.89 0.95 6275 84406
chr6 27791884 27792257 + HIST1H4J ENSG00000197238.3 27791884 0.85 0.82 6276 93468
chr6 27798952 27799305 - HIST1H4K ENSG00000197914.2 27799305 0.86 0.91 6277 99436
chr6 27805658 27806117 - HIST1H2AK ENSG00000184348.2 27806117 0.94 0.91 6278 92624
chr6 27806323 27823487 + HIST1H2BN ENSG00000233822.3 27806323 0.89 0.84 6279 92418
chr6 27833034 27833606 + HIST1H2AL ENSG00000198374.3 27833034 0.92 0.97 6280 65707
chr6 27834570 27835359 - HIST1H1B ENSG00000184357.3 27835359 0.87 0.97 6281 63382
chr6 27839623 27840099 - HIST1H3I ENSG00000182572.2 27840099 0.9 0.97 6282 58642
chr6 27840926 27841289 - HIST1H4L ENSG00000198558.2 27841289 0.95 1.0 6283 57452
chr6 27858093 27860884 - HIST1H3J ENSG00000197153.3 27860884 0.89 0.95 6284 37857
chr6 27860477 27860963 - HIST1H2AM ENSG00000233224.1 27860963 0.9 0.94 6285 37778
chr6 27861203 27861669 + HIST1H2BO ENSG00000196331.5 27861203 0.92 0.82 6286 37538
chr6 27878963 27880174 - OR2B2 ENSG00000168131.2 27880174 0.96 1.0 6287 18567
Expression level of Genes
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miRNAs possibly regulated by vista51458[chr6:27798416-27798741]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results