EnhancerDB
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  3. vista51459[chr6:27807310-27807672]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista51459[chr6:27807310-27807672]
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Tissue distribution of vista51459
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Transcription factor that possibly regulate vista51459[chr6:27807310-27807672]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr6 27803889 27808198 POLR2A UCSC Txn Factor no Conserved 108539358
chr6 27807475 27807895 E2F4 UCSC Txn Factor no Conserved 108539359
chr6 27807506 27807826 NFYB UCSC Txn Factor no Conserved 108539360
chr6 27807373 27807383 HMBOX1 JASPAR yes 70340249
chr6 27807377 27807392 PRDM1 JASPAR yes 70340250
chr6 27807382 27807400 NR3C1 JASPAR yes 70340251
chr6 27807390 27807407 RXRA JASPAR yes 70340252
chr6 27807397 27807410 NR2F1 JASPAR yes 70340253
chr6 27807408 27807419 FOXC1 JASPAR yes 70340254
chr6 27807408 27807420 FOXC2 JASPAR yes 70340255
chr6 27807416 27807420 TEAD2 TRANSFAC yes 70340256
chr6 27807416 27807436 TBX19 JASPAR yes 70340257
chr6 27807418 27807434 T JASPAR yes 70340258
chr6 27807420 27807427 NKX3-1 JASPAR yes 70340259
chr6 27807424 27807432 ISL2 JASPAR yes 70340260
chr6 27807424 27807433 NKX3-2 JASPAR yes 70340261
chr6 27807443 27807448 GATA2 JASPAR yes 70340262
chr6 27807444 27807450 ZNF354C JASPAR yes 70340263
chr6 27807451 27807462 ELK4 JASPAR yes 70340264
chr6 27807451 27807462 FLI1 JASPAR yes 70340265
chr6 27807452 27807462 ELK1 JASPAR yes 70340266
chr6 27807452 27807462 ELK3 JASPAR yes 70340267
chr6 27807452 27807462 ERF JASPAR yes 70340268
chr6 27807452 27807462 ERG JASPAR yes 70340269
chr6 27807452 27807462 ETS1 JASPAR yes 70340270
chr6 27807452 27807462 ETV1 JASPAR yes 70340271
chr6 27807452 27807462 ETV4 JASPAR yes 70340272
chr6 27807452 27807462 ETV5 JASPAR yes 70340273
chr6 27807452 27807462 FEV JASPAR yes 70340274
chr6 27807452 27807462 FLI1 JASPAR yes 70340275
chr6 27807453 27807462 ELK4 JASPAR yes 70340276
chr6 27807454 27807460 ETS1 JASPAR yes 70340277
chr6 27807454 27807460 SPI1 JASPAR yes 70340278
chr6 27807454 27807464 ELK1 JASPAR yes 70340279
chr6 27807465 27807469 NFE TRANSFAC yes 70340280
chr6 27807477 27807492 FOXA1 JASPAR yes 70340281
chr6 27807501 27807506 MYC TRANSFAC yes 70340282
chr6 27807502 27807511 HIC2 JASPAR yes 70340283
chr6 27807502 27807512 NFIA JASPAR yes 70340284
chr6 27807503 27807512 NFIX JASPAR yes 70340285
chr6 27807504 27807510 NFIC JASPAR yes 70340286
chr6 27807530 27807545 FOXA1 JASPAR yes 70340287
chr6 27807531 27807543 FOXI1 JASPAR yes 70340288
chr6 27807532 27807544 FOXC2 JASPAR yes 70340289
chr6 27807534 27807545 FOXA1 JASPAR yes 70340290
chr6 27807571 27807577 MZF1 JASPAR yes 70340291
chr6 27807576 27807588 IRF1 JASPAR yes 70340292
chr6 27807587 27807599 HNF1B JASPAR yes 70340293
chr6 27807598 27807604 GATA3 JASPAR yes 70340294
chr6 27807640 27807645 MYC TRANSFAC yes 70340295
chr6 27807648 27807653 ATF1 TRANSFAC yes 70340296
SNP sites on vista51459[chr6:27807310-27807672]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr6 27807323 rs183129904 G C
POLR2A
8934150
chr6 27807568 rs78499880 C T
E2F4 NFYB POLR2A
8934151
chr6 27807582 rs532877126 G A
E2F4 IRF1 NFYB POLR2A
8934152
Genes possibly regulated by vista51459[chr6:27807310-27807672]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr6 27775257 27775709 - HIST1H2BL ENSG00000185130.4 27775709 0.92 0.91 6271 68399
chr6 27775899 27776429 + HIST1H2AI ENSG00000196747.3 27775899 0.88 0.89 6272 68589
chr6 27777842 27778314 + HIST1H3H ENSG00000203813.4 27777842 0.84 0.89 6273 70532
chr6 27782112 27782607 - HIST1H2AJ ENSG00000182611.3 27782607 0.89 0.95 6274 75297
chr6 27782822 27783267 + HIST1H2BM ENSG00000196374.5 27782822 0.89 0.95 6275 75512
chr6 27791884 27792257 + HIST1H4J ENSG00000197238.3 27791884 0.85 0.82 6276 84574
chr6 27798952 27799305 - HIST1H4K ENSG00000197914.2 27799305 0.86 0.91 6277 91995
chr6 27805658 27806117 - HIST1H2AK ENSG00000184348.2 27806117 0.94 0.91 6278 98807
chr6 27806323 27823487 + HIST1H2BN ENSG00000233822.3 27806323 0.89 0.84 6279 99013
chr6 27833034 27833606 + HIST1H2AL ENSG00000198374.3 27833034 0.92 0.97 6280 74638
chr6 27834570 27835359 - HIST1H1B ENSG00000184357.3 27835359 0.87 0.97 6281 72313
chr6 27839623 27840099 - HIST1H3I ENSG00000182572.2 27840099 0.9 0.97 6282 67573
chr6 27840926 27841289 - HIST1H4L ENSG00000198558.2 27841289 0.95 1.0 6283 66383
chr6 27858093 27860884 - HIST1H3J ENSG00000197153.3 27860884 0.89 0.95 6284 46788
chr6 27860477 27860963 - HIST1H2AM ENSG00000233224.1 27860963 0.9 0.94 6285 46709
chr6 27861203 27861669 + HIST1H2BO ENSG00000196331.5 27861203 0.92 0.82 6286 46469
chr6 27878963 27880174 - OR2B2 ENSG00000168131.2 27880174 0.96 1.0 6287 27498
Expression level of Genes
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miRNAs possibly regulated by vista51459[chr6:27807310-27807672]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results