EnhancerDB
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  3. vista51470[chr6:28280351-28280639]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista51470[chr6:28280351-28280639]
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Tissue distribution of vista51470
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Transcription factor that possibly regulate vista51470[chr6:28280351-28280639]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr6 28280359 28280380 IRF1 JASPAR yes 70340668
chr6 28280361 28280376 STAT2 JASPAR yes 70340669
chr6 28280362 28280376 STAT1 JASPAR yes 70340670
chr6 28280363 28280375 IRF1 JASPAR yes 70340671
chr6 28280363 28280377 IRF7 JASPAR yes 70340672
chr6 28280363 28280378 IRF9 JASPAR yes 70340673
chr6 28280368 28280372 YY1 TRANSFAC yes 70340674
chr6 28280368 28280389 ZNF263 JASPAR yes 70340675
chr6 28280369 28280379 NFATC3 JASPAR yes 70340676
chr6 28280370 28280377 NFATC2 JASPAR yes 70340677
chr6 28280391 28280402 DMRT3 JASPAR yes 70340678
chr6 28280427 28280437 HMBOX1 JASPAR yes 70340679
chr6 28280447 28280451 ESR1 TRANSFAC yes 70340680
chr6 28280456 28280460 TEAD2 TRANSFAC yes 70340681
chr6 28280457 28280465 DLX6 JASPAR yes 70340682
chr6 28280457 28280465 MSX2 JASPAR yes 70340683
chr6 28280457 28280471 ONECUT3 JASPAR yes 70340684
chr6 28280458 28280468 PAX3 JASPAR yes 70340685
chr6 28280458 28280469 DUX4 JASPAR yes 70340686
chr6 28280458 28280469 PHOX2A JASPAR yes 70340687
chr6 28280458 28280469 PROP1 JASPAR yes 70340688
chr6 28280492 28280496 TEAD2 TRANSFAC yes 70340689
chr6 28280510 28280514 YY1 TRANSFAC yes 70340690
chr6 28280517 28280523 MYC TRANSFAC yes 70340691
chr6 28280531 28280545 ONECUT1 JASPAR yes 70340692
chr6 28280531 28280545 ONECUT2 JASPAR yes 70340693
chr6 28280531 28280545 ONECUT3 JASPAR yes 70340694
chr6 28280532 28280542 CUX1 JASPAR yes 70340695
chr6 28280532 28280542 CUX2 JASPAR yes 70340696
chr6 28280538 28280547 PITX3 JASPAR yes 70340697
chr6 28280539 28280547 RHOXF1 JASPAR yes 70340698
chr6 28280562 28280575 HSF2 JASPAR yes 70340699
chr6 28280575 28280585 NFATC3 JASPAR yes 70340700
chr6 28280587 28280605 NFYA JASPAR yes 70340701
chr6 28280590 28280599 VENTX JASPAR yes 70340702
chr6 28280590 28280600 EMX2 JASPAR yes 70340703
chr6 28280590 28280600 EN2 JASPAR yes 70340704
chr6 28280590 28280600 ESX1 JASPAR yes 70340705
chr6 28280590 28280600 GBX1 JASPAR yes 70340706
chr6 28280590 28280600 GBX2 JASPAR yes 70340707
chr6 28280590 28280600 GSX1 JASPAR yes 70340708
chr6 28280590 28280600 HESX1 JASPAR yes 70340709
chr6 28280590 28280600 HOXA2 JASPAR yes 70340710
chr6 28280590 28280600 HOXB3 JASPAR yes 70340711
chr6 28280590 28280600 LBX2 JASPAR yes 70340712
chr6 28280590 28280600 LHX2 JASPAR yes 70340713
chr6 28280590 28280600 MIXL1 JASPAR yes 70340714
chr6 28280590 28280600 RAX JASPAR yes 70340715
chr6 28280591 28280595 H1TF2 TRANSFAC yes 70340716
chr6 28280591 28280595 NFE TRANSFAC yes 70340717
chr6 28280591 28280595 SRF TRANSFAC yes 70340718
chr6 28280591 28280599 BARX1 JASPAR yes 70340719
chr6 28280591 28280599 BSX JASPAR yes 70340720
chr6 28280591 28280599 EN1 JASPAR yes 70340721
chr6 28280591 28280599 ISX JASPAR yes 70340722
chr6 28280591 28280599 LHX9 JASPAR yes 70340723
chr6 28280591 28280599 MSX1 JASPAR yes 70340724
chr6 28280591 28280599 MSX2 JASPAR yes 70340725
chr6 28280591 28280599 PRRX1 JASPAR yes 70340726
chr6 28280591 28280599 RAX2 JASPAR yes 70340727
chr6 28280591 28280599 SHOX JASPAR yes 70340728
chr6 28280591 28280605 POU1F1 JASPAR yes 70340729
chr6 28280592 28280604 POU3F1 JASPAR yes 70340730
chr6 28280592 28280604 POU3F2 JASPAR yes 70340731
chr6 28280592 28280605 POU3F3 JASPAR yes 70340732
chr6 28280593 28280605 POU2F1 JASPAR yes 70340733
chr6 28280594 28280603 POU5F1B JASPAR yes 70340734
chr6 28280607 28280628 IRF1 JASPAR yes 70340735
chr6 28280610 28280631 IRF1 JASPAR yes 70340736
chr6 28280611 28280632 IRF1 JASPAR yes 70340737
chr6 28280612 28280627 FOXP1 JASPAR yes 70340738
chr6 28280612 28280633 IRF1 JASPAR yes 70340739
chr6 28280613 28280628 FOXP1 JASPAR yes 70340740
chr6 28280613 28280634 IRF1 JASPAR yes 70340741
chr6 28280614 28280629 FOXP1 JASPAR yes 70340742
chr6 28280614 28280635 IRF1 JASPAR yes 70340743
chr6 28280615 28280630 FOXP1 JASPAR yes 70340744
chr6 28280615 28280636 IRF1 JASPAR yes 70340745
chr6 28280616 28280631 FOXP1 JASPAR yes 70340746
chr6 28280616 28280637 IRF1 JASPAR yes 70340747
chr6 28280617 28280632 FOXP1 JASPAR yes 70340748
chr6 28280618 28280633 FOXP1 JASPAR yes 70340749
chr6 28280619 28280634 FOXP1 JASPAR yes 70340750
chr6 28280620 28280635 FOXP1 JASPAR yes 70340751
chr6 28280621 28280636 FOXP1 JASPAR yes 70340752
chr6 28280622 28280637 FOXP1 JASPAR yes 70340753
chr6 28280623 28280638 FOXP1 JASPAR yes 70340754
chr6 28280624 28280639 FOXP1 JASPAR yes 70340755
SNP sites on vista51470[chr6:28280351-28280639]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr6 28280418 rs10579860 CAG C no 8935482
chr6 28280537 rs4711166 T A
CUX1 CUX2 ONECUT1 ONECUT2 ONECUT3
8935483
chr6 28280546 rs532910017 C G
PITX3 RHOXF1
8935484
chr6 28280567 rs9468337 C G,T
HSF2
8935485
chr6 28280590 rs73385839 T A
EMX2 EN2 ESX1 GBX1 GBX2 GSX1 HESX1 HOXA2 HOXB3 LBX2 LHX2 MIXL1 NFYA RAX VENTX
8935486
Genes possibly regulated by vista51470[chr6:28280351-28280639]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr6 28192664 28201260 + ZSCAN9 ENSG00000137185.7 28192664 0.78 0.99 6292 12313
chr6 28212401 28227011 - ZKSCAN4 ENSG00000187626.7 28227011 0.74 0.99 6293 46660
chr6 28227098 28228736 + NKAPL ENSG00000189134.3 28227098 0.73 0.0 6294 46747
chr6 28249314 28270326 + PGBD1 ENSG00000137338.4 28249314 0.66 0.99 6295 68963
chr6 28292470 28324048 - ZSCAN31 ENSG00000235109.3 28324048 0.67 0.99 6296 56591
chr6 28317691 28336947 + ZKSCAN3 ENSG00000189298.9 28317691 0.73 0.99 6297 62948
chr6 28346732 28367511 - ZSCAN12 ENSG00000158691.10 28367511 0.73 0.91 6298 13128
Expression level of Genes
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miRNAs possibly regulated by vista51470[chr6:28280351-28280639]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results