EnhancerDB
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  3. vista51484[chr6:28805076-28805418]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista51484[chr6:28805076-28805418]
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Tissue distribution of vista51484
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Transcription factor that possibly regulate vista51484[chr6:28805076-28805418]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr6 28805092 28805517 CTCF UCSC Txn Factor no Conserved 108539425
chr6 28805149 28807150 POLR2A UCSC Txn Factor no Conserved 108539426
chr6 28805153 28805456 SMC3 UCSC Txn Factor no Conserved 108539427
chr6 28805188 28805459 RAD21 UCSC Txn Factor no Conserved 108539428
chr6 28805073 28805087 E2F7 JASPAR yes 70341469
chr6 28805073 28805087 E2F7 JASPAR yes 100984912
chr6 28805074 28805086 E2F8 JASPAR yes 70341470
chr6 28805074 28805086 E2F8 JASPAR yes 100984913
chr6 28805078 28805093 FOXP1 JASPAR yes 70341471
chr6 28805078 28805093 FOXP1 JASPAR yes 100984914
chr6 28805085 28805091 HiNF-A TRANSFAC yes 70341472
chr6 28805085 28805091 HiNF-A TRANSFAC yes 100984915
chr6 28805098 28805102 YY1 TRANSFAC yes 70341473
chr6 28805098 28805102 YY1 TRANSFAC yes 100984916
chr6 28805122 28805136 CREB3 JASPAR yes 70341474
chr6 28805122 28805136 CREB3 JASPAR yes 100984917
chr6 28805123 28805129 ZNF354C JASPAR yes 70341475
chr6 28805123 28805129 ZNF354C JASPAR yes 100984918
chr6 28805124 28805142 TP73 JASPAR yes 70341476
chr6 28805124 28805142 TP73 JASPAR yes 100984919
chr6 28805127 28805132 ATF1 TRANSFAC yes 70341477
chr6 28805127 28805132 ATF1 TRANSFAC yes 100984920
chr6 28805135 28805153 NR3C1 JASPAR yes 70341478
chr6 28805135 28805153 NR3C1 JASPAR yes 100984921
chr6 28805137 28805142 ATF1 TRANSFAC yes 70341479
chr6 28805137 28805142 ATF1 TRANSFAC yes 100984922
chr6 28805175 28805181 ZNF354C JASPAR yes 70341480
chr6 28805175 28805181 ZNF354C JASPAR yes 100984923
chr6 28805180 28805191 HOXC13 JASPAR yes 70341481
chr6 28805180 28805191 HOXC13 JASPAR yes 100984924
chr6 28805228 28805233 H4TF1 TRANSFAC yes 70341482
chr6 28805228 28805233 H4TF1 TRANSFAC yes 100984925
chr6 28805241 28805244 MYB TRANSFAC yes 70341483
chr6 28805241 28805244 MYB TRANSFAC yes 100984926
chr6 28805293 28805298 GATA2 JASPAR yes 70341484
chr6 28805293 28805298 GATA2 JASPAR yes 100984927
chr6 28805310 28805319 ZEB1 JASPAR yes 70341485
chr6 28805310 28805319 ZEB1 JASPAR yes 100984928
chr6 28805311 28805321 ID4 JASPAR yes 70341486
chr6 28805311 28805321 TCF3 JASPAR yes 70341487
chr6 28805311 28805321 TCF4 JASPAR yes 70341488
chr6 28805311 28805321 ID4 JASPAR yes 100984929
chr6 28805311 28805321 TCF3 JASPAR yes 100984930
chr6 28805311 28805321 TCF4 JASPAR yes 100984931
chr6 28805312 28805321 SNAI2 JASPAR yes 70341489
chr6 28805312 28805321 SNAI2 JASPAR yes 100984932
chr6 28805313 28805318 USF2 TRANSFAC yes 70341490
chr6 28805313 28805318 USF2 TRANSFAC yes 100984933
chr6 28805316 28805320 NFE TRANSFAC yes 70341491
chr6 28805316 28805320 NFE TRANSFAC yes 100984934
chr6 28805336 28805350 XBP1 JASPAR yes 70341492
chr6 28805336 28805350 XBP1 JASPAR yes 100984935
chr6 28805337 28805351 ATF7 JASPAR yes 70341493
chr6 28805337 28805351 BATF3 JASPAR yes 70341494
chr6 28805337 28805351 CREB3 JASPAR yes 70341495
chr6 28805337 28805351 ATF7 JASPAR yes 100984936
chr6 28805337 28805351 BATF3 JASPAR yes 100984937
chr6 28805337 28805351 CREB3 JASPAR yes 100984938
chr6 28805340 28805343 MYB TRANSFAC yes 70341496
chr6 28805340 28805343 MYB TRANSFAC yes 100984939
chr6 28805342 28805347 ATF1 TRANSFAC yes 70341497
chr6 28805342 28805347 ATF1 TRANSFAC yes 100984940
chr6 28805353 28805358 ETS2 TRANSFAC yes 70341498
chr6 28805353 28805358 ETS2 TRANSFAC yes 100984941
chr6 28805365 28805370 GATA2 JASPAR yes 70341499
chr6 28805365 28805370 GATA2 JASPAR yes 100984942
chr6 28805385 28805406 IRF1 JASPAR yes 70341500
chr6 28805385 28805406 IRF1 JASPAR yes 100984943
chr6 28805408 28805423 HNF4A JASPAR yes 70341501
chr6 28805408 28805423 HNF4A JASPAR yes 100984944
chr6 28805409 28805423 NR2F1 JASPAR yes 70341502
chr6 28805409 28805423 RXRG JASPAR yes 70341503
chr6 28805409 28805423 NR2F1 JASPAR yes 100984945
chr6 28805409 28805423 RXRG JASPAR yes 100984946
chr6 28805409 28805424 HNF4G JASPAR yes 70341504
chr6 28805409 28805424 HNF4G JASPAR yes 100984947
SNP sites on vista51484[chr6:28805076-28805418]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr6 28805161 rs139842711 G A
CTCF POLR2A SMC3
8937962
chr6 28805246 rs193278904 A G
CTCF POLR2A RAD21 SMC3
8937963
chr6 28805255 rs115005032 G A
CTCF POLR2A RAD21 SMC3
8937964
chr6 28805316 rs554946658 C A
CTCF ID4 NFE POLR2A RAD21 SMC3 SNAI2 TCF3 TCF4 USF2 ZEB1
8937965
Genes possibly regulated by vista51484[chr6:28805076-28805418]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr6 28870779 28891766 - TRIM27 ENSG00000204713.6 28891766 0.56 0.79 6303 13652
Expression level of Genes
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miRNAs possibly regulated by vista51484[chr6:28805076-28805418]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results