EnhancerDB
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  3. vista51489[chr6:28956602-28956848]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista51489[chr6:28956602-28956848]
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Tissue distribution of vista51489
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Transcription factor that possibly regulate vista51489[chr6:28956602-28956848]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr6 28956254 28956912 CTCF UCSC Txn Factor no Conserved 108539432
chr6 28956584 28956968 TBP UCSC Txn Factor no Conserved 108539433
chr6 28956594 28957060 RPC155 UCSC Txn Factor no Conserved 108539434
chr6 28956603 28956609 YY1 JASPAR yes 70341638
chr6 28956603 28956609 YY1 JASPAR yes 100995843
chr6 28956628 28956641 NR2F1 JASPAR yes 70341639
chr6 28956628 28956641 NR2F1 JASPAR yes 100995844
chr6 28956630 28956648 RARA JASPAR yes 70341640
chr6 28956630 28956648 RARA JASPAR yes 100995845
chr6 28956632 28956636 ESR1 TRANSFAC yes 70341641
chr6 28956632 28956636 ESR1 TRANSFAC yes 100995846
chr6 28956637 28956642 TFAP2A TRANSFAC yes 70341642
chr6 28956637 28956642 TFAP2A TRANSFAC yes 100995847
chr6 28956637 28956643 MZF1 JASPAR yes 70341643
chr6 28956637 28956643 MZF1 JASPAR yes 100995848
chr6 28956658 28956663 SP1 TRANSFAC yes 70341644
chr6 28956658 28956663 SP1 TRANSFAC yes 100995849
chr6 28956659 28956671 TFAP2A JASPAR yes 70341645
chr6 28956659 28956671 TFAP2B JASPAR yes 70341646
chr6 28956659 28956671 TFAP2A JASPAR yes 100995850
chr6 28956659 28956671 TFAP2B JASPAR yes 100995851
chr6 28956660 28956669 TFAP2A JASPAR yes 70341647
chr6 28956660 28956669 TFAP2A JASPAR yes 100995852
chr6 28956662 28956682 RREB1 JASPAR yes 70341648
chr6 28956662 28956682 RREB1 JASPAR yes 100995853
chr6 28956663 28956683 RREB1 JASPAR yes 70341649
chr6 28956663 28956683 RREB1 JASPAR yes 100995854
chr6 28956664 28956684 RREB1 JASPAR yes 70341650
chr6 28956664 28956684 RREB1 JASPAR yes 100995855
chr6 28956664 28956685 ZNF263 JASPAR yes 70341651
chr6 28956664 28956685 ZNF263 JASPAR yes 100995856
chr6 28956667 28956672 SP1 TRANSFAC yes 70341652
chr6 28956667 28956672 SP1 TRANSFAC yes 100995857
chr6 28956667 28956677 ZNF740 JASPAR yes 70341653
chr6 28956667 28956677 ZNF740 JASPAR yes 100995858
chr6 28956668 28956678 SP1 JASPAR yes 70341654
chr6 28956668 28956678 ZNF740 JASPAR yes 70341655
chr6 28956668 28956678 SP1 JASPAR yes 100995859
chr6 28956668 28956678 ZNF740 JASPAR yes 100995860
chr6 28956669 28956679 SP1 JASPAR yes 70341656
chr6 28956669 28956679 ZNF740 JASPAR yes 70341657
chr6 28956669 28956679 SP1 JASPAR yes 100995861
chr6 28956669 28956679 ZNF740 JASPAR yes 100995862
chr6 28956670 28956680 SP1 JASPAR yes 70341658
chr6 28956670 28956680 ZNF740 JASPAR yes 70341659
chr6 28956670 28956680 SP1 JASPAR yes 100995863
chr6 28956670 28956680 ZNF740 JASPAR yes 100995864
chr6 28956671 28956681 SP1 JASPAR yes 70341660
chr6 28956671 28956681 ZNF740 JASPAR yes 70341661
chr6 28956671 28956681 SP1 JASPAR yes 100995865
chr6 28956671 28956681 ZNF740 JASPAR yes 100995866
chr6 28956672 28956682 SP1 JASPAR yes 70341662
chr6 28956672 28956682 ZNF740 JASPAR yes 70341663
chr6 28956672 28956682 SP1 JASPAR yes 100995867
chr6 28956672 28956682 ZNF740 JASPAR yes 100995868
chr6 28956673 28956683 ZNF740 JASPAR yes 70341664
chr6 28956673 28956683 ZNF740 JASPAR yes 100995869
chr6 28956683 28956700 ZNF410 JASPAR yes 70341665
chr6 28956683 28956700 ZNF410 JASPAR yes 100995870
chr6 28956706 28956714 TBX5 JASPAR yes 70341666
chr6 28956706 28956714 TBX5 JASPAR yes 100995871
chr6 28956716 28956735 CTCF JASPAR yes 70341667
chr6 28956716 28956735 CTCF JASPAR yes 100995872
chr6 28956748 28956762 SPI1 JASPAR yes 70341668
chr6 28956748 28956762 SPIC JASPAR yes 70341669
chr6 28956748 28956762 SPI1 JASPAR yes 100995873
chr6 28956748 28956762 SPIC JASPAR yes 100995874
chr6 28956750 28956762 EHF JASPAR yes 70341670
chr6 28956750 28956762 EHF JASPAR yes 100995875
chr6 28956754 28956760 ETS1 JASPAR yes 70341671
chr6 28956754 28956760 SPI1 JASPAR yes 70341672
chr6 28956754 28956760 ETS1 JASPAR yes 100995876
chr6 28956754 28956760 SPI1 JASPAR yes 100995877
chr6 28956764 28956769 MYC TRANSFAC yes 70341673
chr6 28956764 28956769 MYC TRANSFAC yes 100995878
chr6 28956789 28956810 REST JASPAR yes 70341674
chr6 28956789 28956810 REST JASPAR yes 100995879
chr6 28956806 28956814 RHOXF1 JASPAR yes 70341675
chr6 28956806 28956814 RHOXF1 JASPAR yes 100995880
chr6 28956806 28956815 PITX3 JASPAR yes 70341676
chr6 28956806 28956815 PITX3 JASPAR yes 100995881
chr6 28956829 28956847 RARA JASPAR yes 70341677
chr6 28956829 28956847 RARA JASPAR yes 100995882
SNP sites on vista51489[chr6:28956602-28956848]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr6 28956620 rs140524431 G A
CTCF RPC155 TBP
8939456
chr6 28956669 rs11411054 G GT
CTCF RPC155 RREB1 SP1 TBP TFAP2A TFAP2B ZNF263 ZNF740
8939457
chr6 28956675 rs538918567 G A
CTCF RPC155 RREB1 SP1 TBP ZNF263 ZNF740
8939458
chr6 28956676 rs9280527 G GC
CTCF RPC155 RREB1 SP1 TBP ZNF263 ZNF740
8939459
chr6 28956751 rs6934470 A C,G
CTCF EHF RPC155 SPI1 SPIC TBP
8939460
chr6 28956779 rs115903160 G A
CTCF RPC155 TBP
8939461
chr6 28956783 rs189193866 G A,C,T
CTCF RPC155 TBP
8939462
chr6 28956788 rs527523724 G C
CTCF RPC155 TBP
8939463
chr6 28956795 rs6934947 G T
CTCF REST RPC155 TBP
8939464
chr6 28956805 rs539107516 G A
CTCF REST RPC155 TBP
8939465
chr6 28956824 rs149603692 C A,T
CTCF RPC155 TBP
8939466
chr6 28956834 rs192922824 G A,C,T
CTCF RARA RPC155 TBP
8939467
Genes possibly regulated by vista51489[chr6:28956602-28956848]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr6 28870779 28891766 - TRIM27 ENSG00000204713.6 28891766 0.56 0.79 6303 35164
chr6 28911654 28912314 + C6orf100 ENSG00000204709.4 28911654 0.86 0.83 6304 55052
chr6 28962562 28973093 - ZNF311 ENSG00000197935.6 28973093 0.75 0.95 6305 83755
chr6 29011990 29013017 - OR2W1 ENSG00000204704.2 29013017 0.0 0.0 6306 43831
chr6 29053985 29055090 - OR2B3 ENSG00000204703.3 29055090 0.0 0.0 6307 1758
Expression level of Genes
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miRNAs possibly regulated by vista51489[chr6:28956602-28956848]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results