EnhancerDB
  1. Home
  2. Enhancers
  3. vista51573[chr6:31542399-31542828]
View enhancers around input chromosomal region
Back to top

Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista51573[chr6:31542399-31542828]
Back to top
Tissue distribution of vista51573
Back to top
Transcription factor that possibly regulate vista51573[chr6:31542399-31542828]
Back to top
Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr6 31541841 31542805 POLR2A UCSC Txn Factor no Conserved 108539602
chr6 31542490 31542941 RELA UCSC Txn Factor no Conserved 108539603
chr6 31542594 31542833 EBF1 UCSC Txn Factor no Conserved 108539604
chr6 31542401 31542412 EBF1 JASPAR yes 70346081
chr6 31542405 31542410 TFAP2A TRANSFAC yes 70346082
chr6 31542405 31542411 MZF1 JASPAR yes 70346083
chr6 31542432 31542452 TP53 JASPAR yes 70346084
chr6 31542463 31542476 NFKB1 JASPAR yes 70346085
chr6 31542464 31542469 TFAP2A TRANSFAC yes 70346086
chr6 31542464 31542470 MZF1 JASPAR yes 70346087
chr6 31542464 31542475 NFKB1 JASPAR yes 70346088
chr6 31542464 31542477 NFKB1 JASPAR yes 70346089
chr6 31542464 31542477 NFKB2 JASPAR yes 70346090
chr6 31542465 31542476 NFKB1 JASPAR yes 70346091
chr6 31542466 31542477 NFKB1 JASPAR yes 70346092
chr6 31542468 31542482 GLIS3 JASPAR yes 70346093
chr6 31542469 31542479 ZNF740 JASPAR yes 70346094
chr6 31542478 31542481 MYB TRANSFAC yes 70346095
chr6 31542485 31542506 REST JASPAR yes 70346096
chr6 31542489 31542506 RARA JASPAR yes 70346097
chr6 31542499 31542514 TFAP2C JASPAR yes 70346098
chr6 31542501 31542515 EBF1 JASPAR yes 70346099
chr6 31542501 31542516 TFAP2A JASPAR yes 70346100
chr6 31542502 31542513 EBF1 JASPAR yes 70346101
chr6 31542503 31542512 TFAP2A JASPAR yes 70346102
chr6 31542508 31542523 PRDM1 JASPAR yes 70346103
chr6 31542535 31542544 ZEB1 JASPAR yes 70346104
chr6 31542581 31542586 SP1 TRANSFAC yes 70346105
chr6 31542589 31542604 PRDM1 JASPAR yes 70346106
chr6 31542630 31542635 ETS2 TRANSFAC yes 70346107
chr6 31542638 31542659 IRF1 JASPAR yes 70346108
chr6 31542657 31542661 YY1 TRANSFAC yes 70346109
chr6 31542672 31542676 ESR1 TRANSFAC yes 70346110
chr6 31542679 31542685 TCF4 TRANSFAC yes 70346111
chr6 31542694 31542700 NFE2 TRANSFAC yes 70346112
chr6 31542711 31542721 NFKB1 JASPAR yes 70346113
chr6 31542711 31542721 RELA JASPAR yes 70346114
chr6 31542727 31542732 H4TF1 TRANSFAC yes 70346115
chr6 31542736 31542745 TFAP2A JASPAR yes 70346116
chr6 31542739 31542752 NFKB2 JASPAR yes 70346117
chr6 31542740 31542750 NFKB1 JASPAR yes 70346118
chr6 31542740 31542751 NFKB1 JASPAR yes 70346119
chr6 31542743 31542763 TP53 JASPAR yes 70346120
chr6 31542744 31542748 NFE TRANSFAC yes 70346121
chr6 31542778 31542793 TFAP2A JASPAR yes 70346122
chr6 31542803 31542813 SP1 JASPAR yes 70346123
SNP sites on vista51573[chr6:31542399-31542828]
Back to top
chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr6 31542476 rs1800630 C A
GLIS3 NFKB1 NFKB2 POLR2A ZNF740
8958352
chr6 31542482 rs1799724 C T
GLIS3 POLR2A
8958353
chr6 31542483 rs113325588 G A
POLR2A
8958354
chr6 31542533 rs4248158 C T
POLR2A RELA
8958355
chr6 31542693 rs4248160 G A
EBF1 POLR2A RELA
8958356
chr6 31542767 rs4248161 A C
EBF1 POLR2A RELA
8958357
chr6 31542828 rs4248163 C G,T
EBF1 RELA
8958358
Genes possibly regulated by vista51573[chr6:31542399-31542828]
Back to top
Details of Genes
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr6 31462658 31478901 + MICB ENSG00000204516.5 31462658 0.79 0.84 6371 20259
chr6 31496494 31498009 + MCCD1 ENSG00000204511.2 31496494 1.0 0.96 6372 54095
chr6 31497996 31510225 - DDX39B ENSG00000198563.9 31510225 0.63 0.75 6374 67826
chr6 31497996 31514385 - ATP6V1G2-DDX39B ENSG00000254870.1 31514385 0.97 0.94 6373 71986
chr6 31512239 31516204 - ATP6V1G2 ENSG00000213760.6 31516204 0.78 0.94 6375 73805
chr6 31514647 31526606 + NFKBIL1 ENSG00000204498.6 31514647 0.68 0.64 6376 72248
chr6 31539831 31542101 + LTA ENSG00000226979.4 31539831 0.98 1.0 6377 97432
chr6 31543344 31546113 + TNF ENSG00000232810.3 31543344 0.96 1.0 6378 99484
chr6 31548302 31550299 - LTB ENSG00000227507.2 31550299 0.94 0.97 6379 92529
chr6 31553901 31556686 + LST1 ENSG00000204482.6 31553901 0.93 0.93 6380 88927
chr6 31556672 31560762 - NCR3 ENSG00000204475.5 31560762 0.93 1.0 6381 82066
chr6 31582961 31584798 + AIF1 ENSG00000204472.8 31582961 0.91 0.96 6382 59867
chr6 31588497 31605548 + PRRC2A ENSG00000204469.8 31588497 0.67 0.79 6383 54331
chr6 31606805 31620482 - BAG6 ENSG00000204463.8 31620482 0.64 0.82 6384 22346
chr6 31620193 31625987 + APOM ENSG00000204444.6 31620193 0.98 0.96 6385 22635
chr6 31626075 31628549 - C6orf47 ENSG00000204439.3 31628549 0.59 0.74 6386 14279
chr6 31629006 31634060 - GPANK1 ENSG00000204438.6 31634060 0.71 0.79 6387 8768
chr6 31633013 31638120 + CSNK2B ENSG00000204435.9 31633013 0.54 0.79 6388 9815
chr6 31633879 31641323 + CSNK2B-LY6G5B-1181 ENSG00000263020.1 31633879 0.93 0.92 6389 8949
chr6 31637944 31641553 + LY6G5B ENSG00000240053.8 31637944 0.68 0.79 6390 4884
Expression level of Genes
Back to top
miRNAs possibly regulated by vista51573[chr6:31542399-31542828]
Back to top
Details of miRNAs
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
Back to top
No results