EnhancerDB
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  3. vista517[chr1:16439002-16439355]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista517[chr1:16439002-16439355]
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Tissue distribution of vista517
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Transcription factor that possibly regulate vista517[chr1:16439002-16439355]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 16439018 16439024 SOX10 JASPAR yes 27025826
chr1 16439018 16439024 SOX10 JASPAR yes 118238451
chr1 16439022 16439031 HIC2 JASPAR yes 27025827
chr1 16439022 16439031 HIC2 JASPAR yes 118238452
chr1 16439025 16439029 LFA1 TRANSFAC yes 27025828
chr1 16439025 16439029 LFA1 TRANSFAC yes 118238453
chr1 16439037 16439045 MEIS3 JASPAR yes 27025829
chr1 16439037 16439045 MEIS3 JASPAR yes 118238454
chr1 16439038 16439050 PKNOX1 JASPAR yes 27025830
chr1 16439038 16439050 PKNOX2 JASPAR yes 27025831
chr1 16439038 16439050 TGIF1 JASPAR yes 27025832
chr1 16439038 16439050 TGIF2 JASPAR yes 27025833
chr1 16439038 16439050 PKNOX1 JASPAR yes 118238455
chr1 16439038 16439050 PKNOX2 JASPAR yes 118238456
chr1 16439038 16439050 TGIF1 JASPAR yes 118238457
chr1 16439038 16439050 TGIF2 JASPAR yes 118238458
chr1 16439062 16439075 SMAD2 JASPAR yes 27025834
chr1 16439062 16439075 SMAD2 JASPAR yes 118238459
chr1 16439064 16439075 E2F6 JASPAR yes 27025835
chr1 16439064 16439075 E2F6 JASPAR yes 118238460
chr1 16439112 16439131 CTCF JASPAR yes 27025836
chr1 16439112 16439131 CTCF JASPAR yes 118238461
chr1 16439122 16439131 THAP1 JASPAR yes 27025837
chr1 16439122 16439131 THAP1 JASPAR yes 118238462
chr1 16439129 16439148 RFX2 JASPAR yes 27025838
chr1 16439129 16439148 RFX2 JASPAR yes 118238463
chr1 16439132 16439136 NFE TRANSFAC yes 27025839
chr1 16439132 16439136 NFE TRANSFAC yes 118238464
chr1 16439145 16439160 STAT1 JASPAR yes 27025840
chr1 16439145 16439160 STAT1 JASPAR yes 118238465
chr1 16439147 16439158 STAT1 JASPAR yes 27025841
chr1 16439147 16439158 STAT3 JASPAR yes 27025842
chr1 16439147 16439158 STAT1 JASPAR yes 118238466
chr1 16439147 16439158 STAT3 JASPAR yes 118238467
chr1 16439155 16439171 GLIS1 JASPAR yes 27025843
chr1 16439155 16439171 GLIS1 JASPAR yes 118238468
chr1 16439156 16439170 GLIS3 JASPAR yes 27025844
chr1 16439156 16439170 GLIS3 JASPAR yes 118238469
chr1 16439163 16439177 PLAG1 JASPAR yes 27025845
chr1 16439163 16439177 PLAG1 JASPAR yes 118238470
chr1 16439163 16439178 NR2C2 JASPAR yes 27025846
chr1 16439163 16439178 NR2C2 JASPAR yes 118238471
chr1 16439163 16439184 ZNF263 JASPAR yes 27025847
chr1 16439163 16439184 ZNF263 JASPAR yes 118238472
chr1 16439164 16439178 RXRB JASPAR yes 27025848
chr1 16439164 16439178 RXRG JASPAR yes 27025849
chr1 16439164 16439178 RXRB JASPAR yes 118238473
chr1 16439164 16439178 RXRG JASPAR yes 118238474
chr1 16439165 16439186 ZNF263 JASPAR yes 27025850
chr1 16439165 16439186 ZNF263 JASPAR yes 118238475
chr1 16439166 16439170 ESR1 TRANSFAC yes 27025851
chr1 16439166 16439170 ESR1 TRANSFAC yes 118238476
chr1 16439173 16439178 ETS2 TRANSFAC yes 27025852
chr1 16439173 16439178 ETS2 TRANSFAC yes 118238477
chr1 16439173 16439185 INSM1 JASPAR yes 27025853
chr1 16439173 16439185 INSM1 JASPAR yes 118238478
chr1 16439175 16439185 MZF1 JASPAR yes 27025854
chr1 16439175 16439185 MZF1 JASPAR yes 118238479
chr1 16439217 16439226 CDX1 JASPAR yes 27025855
chr1 16439217 16439226 CDX1 JASPAR yes 118238480
chr1 16439217 16439228 CDX2 JASPAR yes 27025856
chr1 16439217 16439228 CDX2 JASPAR yes 118238481
chr1 16439221 16439234 ELF1 JASPAR yes 27025857
chr1 16439221 16439234 ELF1 JASPAR yes 118238482
chr1 16439224 16439235 ELK4 JASPAR yes 27025858
chr1 16439224 16439235 FLI1 JASPAR yes 27025859
chr1 16439224 16439235 ELK4 JASPAR yes 118238483
chr1 16439224 16439235 FLI1 JASPAR yes 118238484
chr1 16439249 16439259 ALX3 JASPAR yes 27025860
chr1 16439249 16439259 EMX1 JASPAR yes 27025861
chr1 16439249 16439259 HOXB2 JASPAR yes 27025862
chr1 16439249 16439259 HOXB3 JASPAR yes 27025863
chr1 16439249 16439259 MEOX2 JASPAR yes 27025864
chr1 16439249 16439259 MNX1 JASPAR yes 27025865
chr1 16439249 16439259 ALX3 JASPAR yes 118238485
chr1 16439249 16439259 EMX1 JASPAR yes 118238486
chr1 16439249 16439259 HOXB2 JASPAR yes 118238487
chr1 16439249 16439259 HOXB3 JASPAR yes 118238488
chr1 16439249 16439259 MEOX2 JASPAR yes 118238489
chr1 16439249 16439259 MNX1 JASPAR yes 118238490
chr1 16439250 16439258 LMX1A JASPAR yes 27025866
chr1 16439250 16439258 LMX1B JASPAR yes 27025867
chr1 16439250 16439258 NKX6-1 JASPAR yes 27025868
chr1 16439250 16439258 NKX6-2 JASPAR yes 27025869
chr1 16439250 16439258 PDX1 JASPAR yes 27025870
chr1 16439250 16439258 VAX1 JASPAR yes 27025871
chr1 16439250 16439258 VAX2 JASPAR yes 27025872
chr1 16439250 16439258 VSX1 JASPAR yes 27025873
chr1 16439250 16439258 LMX1A JASPAR yes 118238491
chr1 16439250 16439258 LMX1B JASPAR yes 118238492
chr1 16439250 16439258 NKX6-1 JASPAR yes 118238493
chr1 16439250 16439258 NKX6-2 JASPAR yes 118238494
chr1 16439250 16439258 PDX1 JASPAR yes 118238495
chr1 16439250 16439258 VAX1 JASPAR yes 118238496
chr1 16439250 16439258 VAX2 JASPAR yes 118238497
chr1 16439250 16439258 VSX1 JASPAR yes 118238498
chr1 16439277 16439298 ZNF263 JASPAR yes 27025874
chr1 16439277 16439298 ZNF263 JASPAR yes 118238499
chr1 16439279 16439292 SMAD2 JASPAR yes 27025875
chr1 16439279 16439292 SMAD2 JASPAR yes 118238500
chr1 16439314 16439335 ZNF263 JASPAR yes 27025876
chr1 16439314 16439335 ZNF263 JASPAR yes 118238501
SNP sites on vista517[chr1:16439002-16439355]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 16439072 rs147352082 A G
E2F6 SMAD2
110075
chr1 16439166 rs76843015 G A
ESR1 GLIS1 GLIS3 NR2C2 PLAG1 RXRB RXRG ZNF263
110076
chr1 16439169 rs11585539 T A
ESR1 GLIS1 GLIS3 NR2C2 PLAG1 RXRB RXRG ZNF263
110077
chr1 16439315 rs192154733 C A,T
ZNF263
110078
Genes possibly regulated by vista517[chr1:16439002-16439355]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 16340523 16346089 - HSPB7 ENSG00000173641.13 16346089 0.98 0.91 221 7087
chr1 16345370 16360545 + CLCNKA ENSG00000186510.7 16345370 0.95 1.0 222 6368
chr1 16370272 16383803 + CLCNKB ENSG00000184908.13 16370272 0.99 1.0 223 31270
chr1 16384264 16400127 - FAM131C ENSG00000185519.8 16400127 0.9 1.0 224 61125
chr1 16450832 16482582 - EPHA2 ENSG00000142627.9 16482582 0.81 1.0 225 56773
chr1 16524349 16539104 - ARHGEF19 ENSG00000142632.12 16539104 0.8 1.0 226 251
Expression level of Genes
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miRNAs possibly regulated by vista517[chr1:16439002-16439355]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results