EnhancerDB
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  3. vista51860[chr6:39287930-39288286]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista51860[chr6:39287930-39288286]
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Tissue distribution of vista51860
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Transcription factor that possibly regulate vista51860[chr6:39287930-39288286]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr6 39287940 39287954 PLAG1 JASPAR yes 70360374
chr6 39287948 39287953 SP1 TRANSFAC yes 70360375
chr6 39287966 39287970 LFA1 TRANSFAC yes 70360376
chr6 39287967 39287977 NHLH1 JASPAR yes 70360377
chr6 39287970 39287981 RUNX1 JASPAR yes 70360378
chr6 39287971 39287981 RUNX3 JASPAR yes 70360379
chr6 39287976 39287980 ESR1 TRANSFAC yes 70360380
chr6 39287985 39287989 NFE TRANSFAC yes 70360381
chr6 39288002 39288016 E2F7 JASPAR yes 70360382
chr6 39288003 39288015 E2F8 JASPAR yes 70360383
chr6 39288029 39288044 HNF4A JASPAR yes 70360384
chr6 39288030 39288044 NR2F1 JASPAR yes 70360385
chr6 39288030 39288044 RXRB JASPAR yes 70360386
chr6 39288030 39288044 RXRG JASPAR yes 70360387
chr6 39288030 39288045 HNF4G JASPAR yes 70360388
chr6 39288041 39288062 ZNF263 JASPAR yes 70360389
chr6 39288044 39288065 ZNF263 JASPAR yes 70360390
chr6 39288058 39288064 ZNF354C JASPAR yes 70360391
chr6 39288062 39288068 SOX10 JASPAR yes 70360392
chr6 39288063 39288081 ESR1 JASPAR yes 70360393
chr6 39288068 39288082 TLX1 JASPAR yes 70360394
chr6 39288077 39288097 TP53 JASPAR yes 70360395
chr6 39288079 39288092 HSF1 JASPAR yes 70360396
chr6 39288079 39288092 HSF2 JASPAR yes 70360397
chr6 39288080 39288098 TP63 JASPAR yes 70360398
chr6 39288081 39288101 TP53 JASPAR yes 70360399
chr6 39288084 39288097 HSF1 JASPAR yes 70360400
chr6 39288084 39288097 HSF2 JASPAR yes 70360401
chr6 39288084 39288097 HSF4 JASPAR yes 70360402
chr6 39288086 39288104 NR3C1 JASPAR yes 70360403
chr6 39288101 39288112 EBF1 JASPAR yes 70360404
chr6 39288124 39288128 LFA1 TRANSFAC yes 70360405
chr6 39288144 39288150 YY1 JASPAR yes 70360406
chr6 39288173 39288192 CTCF JASPAR yes 70360407
chr6 39288196 39288208 ZBTB7A JASPAR yes 70360408
chr6 39288198 39288203 SP1 TRANSFAC yes 70360409
chr6 39288201 39288206 SP1 TRANSFAC yes 70360410
chr6 39288208 39288217 SNAI2 JASPAR yes 70360411
chr6 39288250 39288254 LFA1 TRANSFAC yes 70360412
SNP sites on vista51860[chr6:39287930-39288286]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr6 39287949 rs559581483 G A
PLAG1 SP1
9012288
chr6 39287995 rs142248379 TCTC T no 9012289
chr6 39288009 rs542152343 C T
E2F7 E2F8
9012290
chr6 39288010 rs76991883 G A
E2F7 E2F8
9012291
chr6 39288025 rs74948169 A G,T no 9012292
chr6 39288090 rs16891904 G A
HSF1 HSF2 HSF4 NR3C1 TP53 TP63
9012293
chr6 39288127 rs73731788 G T
LFA1
9012294
chr6 39288189 rs566714966 G A
CTCF
9012295
chr6 39288248 rs145712152 C T no 9012296
chr6 39288266 rs185840930 C A no 9012297
Genes possibly regulated by vista51860[chr6:39287930-39288286]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr6 39156749 39197226 - KCNK5 ENSG00000164626.8 39197226 0.85 1.0 6551 9296
chr6 39266777 39282329 - KCNK17 ENSG00000124780.9 39282329 0.91 0.0 6552 94399
chr6 39282474 39290744 - KCNK16 ENSG00000095981.6 39290744 1.0 0.0 6553 97542
Expression level of Genes
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miRNAs possibly regulated by vista51860[chr6:39287930-39288286]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results