EnhancerDB
  1. Home
  2. Enhancers
  3. vista51868[chr6:39787581-39787781]
View enhancers around input chromosomal region
Back to top

Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista51868[chr6:39787581-39787781]
Back to top
Tissue distribution of vista51868
Back to top
Transcription factor that possibly regulate vista51868[chr6:39787581-39787781]
Back to top
Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr6 39787609 39787620 HOXC13 JASPAR yes 70360691
chr6 39787609 39787620 HOXC13 JASPAR yes 101553184
chr6 39787610 39787622 SRF JASPAR yes 70360692
chr6 39787610 39787622 SRF JASPAR yes 101553185
chr6 39787613 39787617 TEAD2 TRANSFAC yes 70360693
chr6 39787613 39787617 TEAD2 TRANSFAC yes 101553186
chr6 39787618 39787622 LFA1 TRANSFAC yes 70360694
chr6 39787618 39787622 LFA1 TRANSFAC yes 101553187
chr6 39787636 39787647 NFKB1 JASPAR yes 70360695
chr6 39787636 39787647 NFKB1 JASPAR yes 101553188
chr6 39787644 39787655 GCM1 JASPAR yes 70360696
chr6 39787644 39787655 GCM1 JASPAR yes 101553189
chr6 39787651 39787666 JUND JASPAR yes 70360697
chr6 39787651 39787666 JUND JASPAR yes 101553190
chr6 39787652 39787665 DUXA JASPAR yes 70360698
chr6 39787652 39787665 JUN JASPAR yes 70360699
chr6 39787652 39787665 DUXA JASPAR yes 101553191
chr6 39787652 39787665 JUN JASPAR yes 101553192
chr6 39787652 39787666 RORA JASPAR yes 70360700
chr6 39787652 39787666 RORA JASPAR yes 101553193
chr6 39787653 39787664 DUX4 JASPAR yes 70360701
chr6 39787653 39787664 DUX4 JASPAR yes 101553194
chr6 39787664 39787669 GATA2 JASPAR yes 70360702
chr6 39787664 39787669 GATA2 JASPAR yes 101553195
chr6 39787675 39787681 SP1 TRANSFAC yes 70360703
chr6 39787675 39787681 SP1 TRANSFAC yes 101553196
chr6 39787675 39787685 SP1 JASPAR yes 70360704
chr6 39787675 39787685 SP1 JASPAR yes 101553197
chr6 39787693 39787707 GATA2 JASPAR yes 70360705
chr6 39787693 39787707 GATA2 JASPAR yes 101553198
chr6 39787695 39787701 GATA3 JASPAR yes 70360706
chr6 39787695 39787701 GATA3 JASPAR yes 101553199
chr6 39787745 39787764 RFX2 JASPAR yes 70360707
chr6 39787745 39787764 RFX2 JASPAR yes 101553200
chr6 39787759 39787763 LFA1 TRANSFAC yes 70360708
chr6 39787759 39787763 LFA1 TRANSFAC yes 101553201
chr6 39787780 39787787 SPIB JASPAR yes 70360709
chr6 39787780 39787787 SPIB JASPAR yes 101553202
chr6 39787780 39787791 FLI1 JASPAR yes 70360710
chr6 39787780 39787791 FLI1 JASPAR yes 101553203
chr6 39787781 39787789 EHF JASPAR yes 70360711
chr6 39787781 39787789 EHF JASPAR yes 101553204
SNP sites on vista51868[chr6:39787581-39787781]
Back to top
chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr6 39787612 rs74776897 T C
HOXC13 SRF
9014720
chr6 39787632 rs188240013 G A no 9014721
chr6 39787641 rs143744717 A C,T
NFKB1
9014722
chr6 39787679 rs9471172 C T
SP1
9014723
chr6 39787759 rs7769617 C T
LFA1 RFX2
9014724
chr6 39787779 rs78978957 A G no 9014725
Genes possibly regulated by vista51868[chr6:39787581-39787781]
Back to top
Details of Genes
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr6 39297766 39693181 - KIF6 ENSG00000164627.13 39693181 0.89 0.94 6554 5600
chr6 39760142 39872648 + DAAM2 ENSG00000146122.12 39760142 0.92 1.0 6555 72561
Expression level of Genes
Back to top
miRNAs possibly regulated by vista51868[chr6:39787581-39787781]
Back to top
Details of miRNAs
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
Back to top
No results