EnhancerDB
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  3. vista5260[chr1:223326849-223326980]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5260[chr1:223326849-223326980]
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Tissue distribution of vista5260
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Transcription factor that possibly regulate vista5260[chr1:223326849-223326980]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 223326843 223326861 ESR1 JASPAR yes 35642632
chr1 223326843 223326861 ESR1 JASPAR yes 118466319
chr1 223326845 223326860 ESR2 JASPAR yes 35642633
chr1 223326845 223326860 ESR2 JASPAR yes 118466320
chr1 223326850 223326856 SOX10 JASPAR yes 35642634
chr1 223326850 223326856 SOX10 JASPAR yes 118466321
chr1 223326854 223326868 EBF1 JASPAR yes 35642635
chr1 223326854 223326868 EBF1 JASPAR yes 118466322
chr1 223326855 223326866 EBF1 JASPAR yes 35642636
chr1 223326855 223326866 EBF1 JASPAR yes 118466323
chr1 223326862 223326867 ETS2 TRANSFAC yes 35642637
chr1 223326862 223326867 ETS2 TRANSFAC yes 118466324
chr1 223326868 223326872 ESR1 TRANSFAC yes 35642638
chr1 223326868 223326872 ESR1 TRANSFAC yes 118466325
chr1 223326878 223326889 TFAP2A JASPAR yes 35642639
chr1 223326878 223326889 TFAP2B JASPAR yes 35642640
chr1 223326878 223326889 TFAP2C JASPAR yes 35642641
chr1 223326878 223326889 TFAP2A JASPAR yes 118466326
chr1 223326878 223326889 TFAP2B JASPAR yes 118466327
chr1 223326878 223326889 TFAP2C JASPAR yes 118466328
chr1 223326892 223326902 HMBOX1 JASPAR yes 35642642
chr1 223326892 223326902 HMBOX1 JASPAR yes 118466329
chr1 223326894 223326897 MYB TRANSFAC yes 35642643
chr1 223326894 223326897 MYB TRANSFAC yes 118466330
chr1 223326916 223326929 ELF1 JASPAR yes 35642644
chr1 223326916 223326929 ELF1 JASPAR yes 118466331
chr1 223326919 223326929 GABPA JASPAR yes 35642645
chr1 223326919 223326929 GABPA JASPAR yes 118466332
chr1 223326919 223326930 ELK4 JASPAR yes 35642646
chr1 223326919 223326930 FLI1 JASPAR yes 35642647
chr1 223326919 223326930 ELK4 JASPAR yes 118466333
chr1 223326919 223326930 FLI1 JASPAR yes 118466334
chr1 223326922 223326936 JUN JASPAR yes 35642648
chr1 223326922 223326936 JUN JASPAR yes 118466335
chr1 223326924 223326935 BATF JASPAR yes 35642649
chr1 223326924 223326935 BATF JASPAR yes 118466336
chr1 223326925 223326936 NFE2L2 JASPAR yes 35642650
chr1 223326925 223326936 NFE2L2 JASPAR yes 118466337
chr1 223326926 223326937 FOS JASPAR yes 35642651
chr1 223326926 223326937 FOSL1 JASPAR yes 35642652
chr1 223326926 223326937 JUND JASPAR yes 35642653
chr1 223326926 223326937 FOS JASPAR yes 118466338
chr1 223326926 223326937 FOSL1 JASPAR yes 118466339
chr1 223326926 223326937 JUND JASPAR yes 118466340
chr1 223326927 223326938 FOSL2 JASPAR yes 35642654
chr1 223326927 223326938 JUNB JASPAR yes 35642655
chr1 223326927 223326938 FOSL2 JASPAR yes 118466341
chr1 223326927 223326938 JUNB JASPAR yes 118466342
chr1 223326927 223326941 JUN JASPAR yes 35642656
chr1 223326927 223326941 JUN JASPAR yes 118466343
chr1 223326932 223326949 RARA JASPAR yes 35642657
chr1 223326932 223326949 RARA JASPAR yes 118466344
chr1 223326937 223326944 NFATC2 JASPAR yes 35642658
chr1 223326937 223326944 NFATC2 JASPAR yes 118466345
chr1 223326970 223326976 MYC TRANSFAC yes 35642659
chr1 223326970 223326976 MYC TRANSFAC yes 118466346
SNP sites on vista5260[chr1:223326849-223326980]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 223326886 rs1640804 A G
TFAP2A TFAP2B TFAP2C
975285
chr1 223326924 rs1773746 G A
BATF ELF1 ELK4 FLI1 GABPA JUN
975286
chr1 223326947 rs1773747 C G,T
RARA
975287
chr1 223326951 rs115380305 G A no 975288
Genes possibly regulated by vista5260[chr1:223326849-223326980]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 223282748 223316624 - TLR5 ENSG00000187554.7 223316624 0.86 1.0 1871 89775
Expression level of Genes
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miRNAs possibly regulated by vista5260[chr1:223326849-223326980]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results