EnhancerDB
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  3. vista52738[chr6:90066169-90066565]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista52738[chr6:90066169-90066565]
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Tissue distribution of vista52738
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Transcription factor that possibly regulate vista52738[chr6:90066169-90066565]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr6 90066172 90066187 MEF2C JASPAR yes 70399675
chr6 90066174 90066189 FOXP1 JASPAR yes 70399676
chr6 90066175 90066190 FOXP1 JASPAR yes 70399677
chr6 90066175 90066196 IRF1 JASPAR yes 70399678
chr6 90066176 90066182 TBP TRANSFAC yes 70399679
chr6 90066176 90066191 FOXP1 JASPAR yes 70399680
chr6 90066179 90066194 STAT2 JASPAR yes 70399681
chr6 90066186 90066201 RUNX2 JASPAR yes 70399682
chr6 90066187 90066198 RUNX1 JASPAR yes 70399683
chr6 90066198 90066213 MEF2A JASPAR yes 70399684
chr6 90066205 90066209 TEAD2 TRANSFAC yes 70399685
chr6 90066205 90066210 TBP TRANSFAC yes 70399686
chr6 90066205 90066211 TMF TRANSFAC yes 70399687
chr6 90066210 90066220 HOXA13 JASPAR yes 70399688
chr6 90066210 90066220 HOXB13 JASPAR yes 70399689
chr6 90066210 90066220 HOXD13 JASPAR yes 70399690
chr6 90066210 90066221 HOXA10 JASPAR yes 70399691
chr6 90066211 90066220 CDX1 JASPAR yes 70399692
chr6 90066211 90066222 CDX2 JASPAR yes 70399693
chr6 90066257 90066268 CDX2 JASPAR yes 70399694
chr6 90066260 90066275 FOXA1 JASPAR yes 70399695
chr6 90066261 90066272 FOXB1 JASPAR yes 70399696
chr6 90066261 90066272 FOXC1 JASPAR yes 70399697
chr6 90066261 90066273 FOXC2 JASPAR yes 70399698
chr6 90066263 90066271 FOXO3 JASPAR yes 70399699
chr6 90066264 90066271 FOXD2 JASPAR yes 70399700
chr6 90066264 90066271 FOXI1 JASPAR yes 70399701
chr6 90066264 90066271 FOXL1 JASPAR yes 70399702
chr6 90066264 90066271 FOXO4 JASPAR yes 70399703
chr6 90066264 90066271 FOXO6 JASPAR yes 70399704
chr6 90066264 90066271 FOXP3 JASPAR yes 70399705
chr6 90066264 90066272 FOXD1 JASPAR yes 70399706
chr6 90066264 90066272 FOXG1 JASPAR yes 70399707
chr6 90066264 90066272 FOXO3 JASPAR yes 70399708
chr6 90066269 90066273 YY1 TRANSFAC yes 70399709
chr6 90066270 90066283 POU3F3 JASPAR yes 70399710
chr6 90066270 90066284 POU1F1 JASPAR yes 70399711
chr6 90066271 90066277 TCF4 TRANSFAC yes 70399712
chr6 90066274 90066285 HOXA10 JASPAR yes 70399713
chr6 90066275 90066285 EMX1 JASPAR yes 70399714
chr6 90066275 90066285 EMX2 JASPAR yes 70399715
chr6 90066275 90066285 EVX1 JASPAR yes 70399716
chr6 90066275 90066285 EVX2 JASPAR yes 70399717
chr6 90066275 90066285 GBX1 JASPAR yes 70399718
chr6 90066275 90066285 GBX2 JASPAR yes 70399719
chr6 90066275 90066285 GSX2 JASPAR yes 70399720
chr6 90066275 90066285 HESX1 JASPAR yes 70399721
chr6 90066275 90066285 HOXA2 JASPAR yes 70399722
chr6 90066275 90066285 HOXB2 JASPAR yes 70399723
chr6 90066275 90066285 HOXB3 JASPAR yes 70399724
chr6 90066275 90066285 LHX2 JASPAR yes 70399725
chr6 90066275 90066285 LHX6 JASPAR yes 70399726
chr6 90066275 90066285 MEOX1 JASPAR yes 70399727
chr6 90066275 90066285 MEOX2 JASPAR yes 70399728
chr6 90066275 90066285 MIXL1 JASPAR yes 70399729
chr6 90066275 90066285 MNX1 JASPAR yes 70399730
chr6 90066275 90066285 NOTO JASPAR yes 70399731
chr6 90066275 90066285 RAX JASPAR yes 70399732
chr6 90066276 90066284 LMX1A JASPAR yes 70399733
chr6 90066276 90066284 LMX1B JASPAR yes 70399734
chr6 90066276 90066284 NKX6-1 JASPAR yes 70399735
chr6 90066276 90066284 NKX6-2 JASPAR yes 70399736
chr6 90066276 90066284 PDX1 JASPAR yes 70399737
chr6 90066276 90066284 VAX1 JASPAR yes 70399738
chr6 90066276 90066284 VAX2 JASPAR yes 70399739
chr6 90066276 90066284 VSX1 JASPAR yes 70399740
chr6 90066276 90066286 POU6F2 JASPAR yes 70399741
chr6 90066278 90066289 ESRRB JASPAR yes 70399742
chr6 90066278 90066294 RFX4 JASPAR yes 70399743
chr6 90066285 90066299 POU4F1 JASPAR yes 70399744
chr6 90066285 90066301 POU4F2 JASPAR yes 70399745
chr6 90066285 90066301 POU4F3 JASPAR yes 70399746
chr6 90066295 90066299 TEAD2 TRANSFAC yes 70399747
chr6 90066300 90066315 FOXP1 JASPAR yes 70399748
chr6 90066312 90066327 FOXP1 JASPAR yes 70399749
chr6 90066313 90066328 FOXP1 JASPAR yes 70399750
chr6 90066313 90066334 IRF1 JASPAR yes 70399751
chr6 90066314 90066329 FOXP1 JASPAR yes 70399752
chr6 90066317 90066332 STAT2 JASPAR yes 70399753
chr6 90066327 90066337 FIGLA JASPAR yes 70399754
chr6 90066327 90066337 MSC JASPAR yes 70399755
chr6 90066327 90066337 TCF3 JASPAR yes 70399756
chr6 90066328 90066337 SNAI2 JASPAR yes 70399757
chr6 90066329 90066334 USF2 TRANSFAC yes 70399758
chr6 90066363 90066374 NFKB1 JASPAR yes 70399759
chr6 90066365 90066370 H4TF1 TRANSFAC yes 70399760
chr6 90066368 90066382 EBF1 JASPAR yes 70399761
chr6 90066369 90066380 EBF1 JASPAR yes 70399762
chr6 90066370 90066381 EBF1 JASPAR yes 70399763
chr6 90066370 90066388 NFYA JASPAR yes 70399764
chr6 90066373 90066389 NFYA JASPAR yes 70399765
chr6 90066378 90066383 NFY TRANSFAC yes 70399766
chr6 90066402 90066406 YY1 TRANSFAC yes 70399767
chr6 90066405 90066419 EBF1 JASPAR yes 70399768
chr6 90066406 90066417 EBF1 JASPAR yes 70399769
chr6 90066407 90066418 EBF1 JASPAR yes 70399770
chr6 90066412 90066417 TFAP2A TRANSFAC yes 70399771
chr6 90066412 90066418 MZF1 JASPAR yes 70399772
chr6 90066507 90066518 FLI1 JASPAR yes 70399773
chr6 90066508 90066516 EHF JASPAR yes 70399774
SNP sites on vista52738[chr6:90066169-90066565]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr6 90066178 rs11969744 A T
FOXP1 IRF1 MEF2C TBP
9183107
chr6 90066191 rs542571123 C A
FOXP1 IRF1 RUNX1 RUNX2 STAT2
9183108
chr6 90066224 rs13215075 G A no 9183109
chr6 90066300 rs545314972 A AT
FOXP1 POU4F2 POU4F3
9183110
chr6 90066371 rs60642905 C T
EBF1 NFKB1 NFYA
9183111
chr6 90066435 rs9342190 G A no 9183112
chr6 90066461 rs139417354 A G no 9183113
Genes possibly regulated by vista52738[chr6:90066169-90066565]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr6 89966927 90025018 - GABRR2 ENSG00000111886.9 90025018 0.76 1.0 6802 58849
chr6 90036344 90062567 - UBE2J1 ENSG00000198833.6 90062567 0.74 0.99 6803 96398
chr6 90074355 90121989 - RRAGD ENSG00000025039.10 90121989 0.82 1.0 6804 44576
chr6 90142889 90343553 + ANKRD6 ENSG00000135299.12 90142889 0.84 1.0 6805 23676
Expression level of Genes
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miRNAs possibly regulated by vista52738[chr6:90066169-90066565]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results