EnhancerDB
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  3. vista5274[chr1:223907308-223907681]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5274[chr1:223907308-223907681]
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Tissue distribution of vista5274
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Transcription factor that possibly regulate vista5274[chr1:223907308-223907681]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 223907238 223907473 FOXA1 UCSC Txn Factor no Conserved 107873108
chr1 223907244 223907462 FOXA2 UCSC Txn Factor no Conserved 107873109
chr1 223907288 223907439 GATA3 UCSC Txn Factor no Conserved 107873112
chr1 223907311 223907320 NKX2-8 JASPAR yes 35672120
chr1 223907311 223907320 NKX2-8 JASPAR yes 118466805
chr1 223907311 223907321 NKX2-3 JASPAR yes 35672121
chr1 223907311 223907321 NKX2-3 JASPAR yes 118466806
chr1 223907312 223907320 ISL2 JASPAR yes 35672122
chr1 223907312 223907320 ISL2 JASPAR yes 118466807
chr1 223907312 223907321 NKX3-2 JASPAR yes 35672123
chr1 223907312 223907321 NKX3-2 JASPAR yes 118466808
chr1 223907314 223907329 HNF4G JASPAR yes 35672124
chr1 223907314 223907329 HNF4G JASPAR yes 118466809
chr1 223907315 223907324 NFIX JASPAR yes 35672125
chr1 223907315 223907324 NFIX JASPAR yes 118466810
chr1 223907315 223907325 NFIA JASPAR yes 35672126
chr1 223907315 223907325 NFIA JASPAR yes 118466811
chr1 223907317 223907323 NFIC JASPAR yes 35672127
chr1 223907317 223907323 NFIC JASPAR yes 118466812
chr1 223907319 223907337 IRF2 JASPAR yes 35672128
chr1 223907319 223907337 IRF2 JASPAR yes 118466813
chr1 223907328 223907337 LEF1 TRANSFAC yes 35672129
chr1 223907328 223907337 LEF1 TRANSFAC yes 118466814
chr1 223907331 223907343 FOXI1 JASPAR yes 35672130
chr1 223907331 223907343 FOXI1 JASPAR yes 118466815
chr1 223907331 223907347 SOX4 JASPAR yes 35672131
chr1 223907331 223907347 SOX4 JASPAR yes 118466816
chr1 223907353 223907364 FOXA1 JASPAR yes 35672132
chr1 223907353 223907364 FOXA1 JASPAR yes 118466817
chr1 223907353 223907368 FOXA1 JASPAR yes 35672133
chr1 223907353 223907368 FOXA1 JASPAR yes 118466818
chr1 223907354 223907365 FOXB1 JASPAR yes 35672134
chr1 223907354 223907365 FOXC1 JASPAR yes 35672135
chr1 223907354 223907365 FOXB1 JASPAR yes 118466819
chr1 223907354 223907365 FOXC1 JASPAR yes 118466820
chr1 223907365 223907380 NFYB JASPAR yes 35672136
chr1 223907365 223907380 NFYB JASPAR yes 118466821
chr1 223907367 223907383 NFYA JASPAR yes 35672137
chr1 223907367 223907383 NFYA JASPAR yes 118466822
chr1 223907372 223907376 H1TF2 TRANSFAC yes 35672138
chr1 223907372 223907376 NFE TRANSFAC yes 35672139
chr1 223907372 223907376 SRF TRANSFAC yes 35672140
chr1 223907372 223907376 H1TF2 TRANSFAC yes 118466823
chr1 223907372 223907376 NFE TRANSFAC yes 118466824
chr1 223907372 223907376 SRF TRANSFAC yes 118466825
chr1 223907385 223907391 GATA3 JASPAR yes 35672141
chr1 223907385 223907391 GATA3 JASPAR yes 118466826
chr1 223907385 223907400 HNF4G JASPAR yes 35672142
chr1 223907385 223907400 HNF4G JASPAR yes 118466827
chr1 223907386 223907400 NR2F1 JASPAR yes 35672143
chr1 223907386 223907400 NR2F1 JASPAR yes 118466828
chr1 223907398 223907401 MYB TRANSFAC yes 35672144
chr1 223907398 223907401 MYB TRANSFAC yes 118466829
chr1 223907399 223907409 TEAD1 JASPAR yes 35672145
chr1 223907399 223907409 TEAD4 JASPAR yes 35672146
chr1 223907399 223907409 TEAD1 JASPAR yes 118466830
chr1 223907399 223907409 TEAD4 JASPAR yes 118466831
chr1 223907399 223907411 TEAD1 JASPAR yes 35672147
chr1 223907399 223907411 TEAD1 JASPAR yes 118466832
chr1 223907400 223907408 TEAD3 JASPAR yes 35672148
chr1 223907400 223907408 TEAD3 JASPAR yes 118466833
chr1 223907415 223907426 E2F6 JASPAR yes 35672149
chr1 223907415 223907426 E2F6 JASPAR yes 118466834
chr1 223907420 223907434 EBF1 JASPAR yes 35672150
chr1 223907420 223907434 EBF1 JASPAR yes 118466835
chr1 223907422 223907433 EBF1 JASPAR yes 35672151
chr1 223907422 223907433 EBF1 JASPAR yes 118466836
chr1 223907434 223907438 TEAD2 TRANSFAC yes 35672152
chr1 223907434 223907438 TEAD2 TRANSFAC yes 118466837
chr1 223907434 223907439 TBP TRANSFAC yes 35672153
chr1 223907434 223907439 TBP TRANSFAC yes 118466838
chr1 223907439 223907449 FIGLA JASPAR yes 35672154
chr1 223907439 223907449 FIGLA JASPAR yes 118466839
chr1 223907498 223907518 RREB1 JASPAR yes 35672155
chr1 223907498 223907518 RREB1 JASPAR yes 118466840
chr1 223907500 223907520 RREB1 JASPAR yes 35672156
chr1 223907500 223907520 RREB1 JASPAR yes 118466841
chr1 223907506 223907526 RREB1 JASPAR yes 35672157
chr1 223907506 223907526 RREB1 JASPAR yes 118466842
chr1 223907508 223907528 RREB1 JASPAR yes 35672158
chr1 223907508 223907528 RREB1 JASPAR yes 118466843
chr1 223907510 223907530 RREB1 JASPAR yes 35672159
chr1 223907510 223907530 RREB1 JASPAR yes 118466844
chr1 223907512 223907532 RREB1 JASPAR yes 35672160
chr1 223907512 223907532 RREB1 JASPAR yes 118466845
chr1 223907514 223907534 RREB1 JASPAR yes 35672161
chr1 223907514 223907534 RREB1 JASPAR yes 118466846
chr1 223907516 223907536 RREB1 JASPAR yes 35672162
chr1 223907516 223907536 RREB1 JASPAR yes 118466847
chr1 223907518 223907538 RREB1 JASPAR yes 35672163
chr1 223907518 223907538 RREB1 JASPAR yes 118466848
chr1 223907532 223907543 NRF1 JASPAR yes 35672164
chr1 223907532 223907543 NRF1 JASPAR yes 118466849
chr1 223907533 223907544 NRF1 JASPAR yes 35672165
chr1 223907533 223907544 NRF1 JASPAR yes 118466850
chr1 223907534 223907545 NRF1 JASPAR yes 35672166
chr1 223907534 223907545 NRF1 JASPAR yes 118466851
chr1 223907535 223907546 NRF1 JASPAR yes 35672167
chr1 223907535 223907546 NRF1 JASPAR yes 118466852
chr1 223907536 223907547 NRF1 JASPAR yes 35672168
chr1 223907536 223907547 NRF1 JASPAR yes 118466853
chr1 223907546 223907550 TEAD2 TRANSFAC yes 35672169
chr1 223907546 223907550 TEAD2 TRANSFAC yes 118466854
chr1 223907557 223907575 NR3C1 JASPAR yes 35672170
chr1 223907557 223907575 NR3C1 JASPAR yes 118466855
chr1 223907560 223907564 ESR1 TRANSFAC yes 35672171
chr1 223907560 223907564 ESR1 TRANSFAC yes 118466856
chr1 223907560 223907575 AR JASPAR yes 35672172
chr1 223907560 223907575 AR JASPAR yes 118466857
chr1 223907563 223907567 YY1 TRANSFAC yes 35672173
chr1 223907563 223907567 YY1 TRANSFAC yes 118466858
chr1 223907565 223907571 TCF4 TRANSFAC yes 35672174
chr1 223907565 223907571 TCF4 TRANSFAC yes 118466859
chr1 223907579 223907591 IRF1 JASPAR yes 35672175
chr1 223907579 223907591 IRF1 JASPAR yes 118466860
chr1 223907584 223907588 YY1 TRANSFAC yes 35672176
chr1 223907584 223907588 YY1 TRANSFAC yes 118466861
chr1 223907614 223907626 TEAD1 JASPAR yes 35672177
chr1 223907614 223907626 TEAD1 JASPAR yes 118466862
chr1 223907619 223907630 RUNX1 JASPAR yes 35672178
chr1 223907619 223907630 RUNX1 JASPAR yes 118466863
chr1 223907650 223907664 TLX1 JASPAR yes 35672179
chr1 223907650 223907664 TLX1 JASPAR yes 118466864
chr1 223907651 223907663 PKNOX2 JASPAR yes 35672180
chr1 223907651 223907663 PKNOX2 JASPAR yes 118466865
chr1 223907651 223907665 TLX1 JASPAR yes 35672181
chr1 223907651 223907665 TLX1 JASPAR yes 118466866
chr1 223907652 223907662 ID4 JASPAR yes 35672182
chr1 223907652 223907662 TCF4 JASPAR yes 35672183
chr1 223907652 223907662 ID4 JASPAR yes 118466867
chr1 223907652 223907662 TCF4 JASPAR yes 118466868
chr1 223907654 223907659 USF2 TRANSFAC yes 35672184
chr1 223907654 223907659 USF2 TRANSFAC yes 118466869
chr1 223907659 223907671 INSM1 JASPAR yes 35672185
chr1 223907659 223907671 INSM1 JASPAR yes 118466870
chr1 223907673 223907691 ESR2 JASPAR yes 35672186
chr1 223907673 223907691 ESR2 JASPAR yes 118466871
chr1 223907676 223907681 SP1 TRANSFAC yes 35672187
chr1 223907676 223907681 SP1 TRANSFAC yes 118466872
chr1 223907681 223907692 ESRRA JASPAR yes 35672188
chr1 223907681 223907692 ESRRB JASPAR yes 35672189
chr1 223907681 223907692 ESRRA JASPAR yes 118466873
chr1 223907681 223907692 ESRRB JASPAR yes 118466874
SNP sites on vista5274[chr1:223907308-223907681]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 223907462 rs115483237 T A
FOXA1 FOXA2
978297
chr1 223907499 rs377365157 GGT G
RREB1
978298
chr1 223907499 rs797020964 GGT G
RREB1
978299
chr1 223907538 rs28370029 G A
NRF1 RREB1
978300
chr1 223907541 rs116826576 C T
NRF1
978301
chr1 223907542 rs181560795 G A
NRF1
978302
chr1 223907543 rs537151564 C T
NRF1
978303
Genes possibly regulated by vista5274[chr1:223907308-223907681]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 223711349 223853436 - CAPN8 ENSG00000203697.7 223853436 0.92 0.99 1874 46128
chr1 223889295 223963720 + CAPN2 ENSG00000162909.13 223889295 0.77 1.0 1875 81987
Expression level of Genes
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miRNAs possibly regulated by vista5274[chr1:223907308-223907681]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results