EnhancerDB
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  3. vista5296[chr1:224545542-224546006]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5296[chr1:224545542-224546006]
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Tissue distribution of vista5296
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Transcription factor that possibly regulate vista5296[chr1:224545542-224546006]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 224544307 224545631 POLR2A UCSC Txn Factor no Conserved 107873725
chr1 224545435 224545759 CEBPB UCSC Txn Factor no Conserved 107873727
chr1 224545506 224545881 STAT1 UCSC Txn Factor no Conserved 107873732
chr1 224545567 224545573 SOX10 JASPAR yes 118468087
chr1 224545587 224545598 CEBPB JASPAR yes 118468088
chr1 224545593 224545597 H1TF2 TRANSFAC yes 118468089
chr1 224545593 224545597 NFE TRANSFAC yes 118468090
chr1 224545593 224545597 SRF TRANSFAC yes 118468091
chr1 224545602 224545613 CEBPB JASPAR yes 118468092
chr1 224545603 224545614 CEBPA JASPAR yes 118468093
chr1 224545620 224545627 NKX3-1 JASPAR yes 118468094
chr1 224545622 224545632 EMX1 JASPAR yes 118468095
chr1 224545622 224545632 GBX2 JASPAR yes 118468096
chr1 224545622 224545632 GSX1 JASPAR yes 118468097
chr1 224545622 224545632 GSX2 JASPAR yes 118468098
chr1 224545622 224545632 HOXB2 JASPAR yes 118468099
chr1 224545622 224545632 HOXB3 JASPAR yes 118468100
chr1 224545622 224545632 MEOX1 JASPAR yes 118468101
chr1 224545622 224545632 MEOX2 JASPAR yes 118468102
chr1 224545622 224545632 MIXL1 JASPAR yes 118468103
chr1 224545622 224545632 MNX1 JASPAR yes 118468104
chr1 224545622 224545633 HOXA10 JASPAR yes 118468105
chr1 224545623 224545631 LMX1A JASPAR yes 118468106
chr1 224545623 224545631 LMX1B JASPAR yes 118468107
chr1 224545623 224545631 NKX6-1 JASPAR yes 118468108
chr1 224545623 224545631 NKX6-2 JASPAR yes 118468109
chr1 224545623 224545631 PDX1 JASPAR yes 118468110
chr1 224545623 224545631 VAX1 JASPAR yes 118468111
chr1 224545623 224545631 VAX2 JASPAR yes 118468112
chr1 224545623 224545631 VSX1 JASPAR yes 118468113
chr1 224545624 224545635 FOXB1 JASPAR yes 118468114
chr1 224545624 224545635 PHOX2A JASPAR yes 118468115
chr1 224545624 224545635 PROP1 JASPAR yes 118468116
chr1 224545627 224545637 MEF2A JASPAR yes 118468117
chr1 224545632 224545636 TEAD2 TRANSFAC yes 118468118
chr1 224545660 224545664 YY1 TRANSFAC yes 118468119
chr1 224545665 224545679 STAT1 JASPAR yes 118468120
chr1 224545668 224545686 SRF JASPAR yes 118468121
chr1 224545669 224545674 ETS2 TRANSFAC yes 118468122
chr1 224545670 224545687 BCL6B JASPAR yes 118468123
chr1 224545671 224545686 STAT1 JASPAR yes 118468124
chr1 224545673 224545684 STAT1 JASPAR yes 118468125
chr1 224545673 224545684 STAT3 JASPAR yes 118468126
chr1 224545682 224545692 MAX JASPAR yes 118468127
chr1 224545688 224545703 SCRT1 JASPAR yes 118468128
chr1 224545692 224545698 PTF TRANSFAC yes 118468129
chr1 224545700 224545713 DUXA JASPAR yes 118468130
chr1 224545704 224545714 GSC2 JASPAR yes 118468131
chr1 224545705 224545713 OTX1 JASPAR yes 118468132
chr1 224545705 224545713 OTX2 JASPAR yes 118468133
chr1 224545715 224545719 YY1 TRANSFAC yes 118468134
chr1 224545721 224545736 TP53 JASPAR yes 118468135
chr1 224545731 224545741 GCM2 JASPAR yes 118468136
chr1 224545744 224545749 GATA2 JASPAR yes 118468137
chr1 224545772 224545787 STAT2 JASPAR yes 118468138
chr1 224545773 224545787 STAT1 JASPAR yes 118468139
chr1 224545776 224545790 POU4F1 JASPAR yes 118468140
chr1 224545779 224545783 YY1 TRANSFAC yes 118468141
chr1 224545789 224545800 FOXH1 JASPAR yes 118468142
chr1 224545797 224545808 SPDEF JASPAR yes 118468143
chr1 224545820 224545832 SRF JASPAR yes 118468144
chr1 224545837 224545842 H4TF1 TRANSFAC yes 118468145
chr1 224545837 224545848 ELF5 JASPAR yes 118468146
chr1 224545837 224545849 EHF JASPAR yes 118468147
chr1 224545837 224545849 ELF1 JASPAR yes 118468148
chr1 224545837 224545850 ELF1 JASPAR yes 118468149
chr1 224545838 224545846 FEV JASPAR yes 118468150
chr1 224545845 224545849 ESR1 TRANSFAC yes 118468151
chr1 224545857 224545863 TCF4 TRANSFAC yes 118468152
chr1 224545868 224545872 YY1 TRANSFAC yes 118468153
chr1 224545871 224545875 YY1 TRANSFAC yes 118468154
chr1 224545896 224545911 MEF2C JASPAR yes 118468155
chr1 224545899 224545909 MEF2A JASPAR yes 118468156
chr1 224545905 224545923 NR3C1 JASPAR yes 118468157
chr1 224545906 224545914 FEV JASPAR yes 118468158
chr1 224545910 224545922 FOXI1 JASPAR yes 118468159
chr1 224545912 224545920 FOXG1 JASPAR yes 118468160
chr1 224545917 224545921 YY1 TRANSFAC yes 118468161
chr1 224545918 224545926 FEV JASPAR yes 118468162
chr1 224545969 224545975 NFE2 TRANSFAC yes 118468163
chr1 224545986 224546001 FOXA1 JASPAR yes 118468164
chr1 224545987 224545998 FOXB1 JASPAR yes 118468165
chr1 224545987 224545998 FOXC1 JASPAR yes 118468166
chr1 224545987 224545999 FOXC2 JASPAR yes 118468167
chr1 224545987 224546005 NR3C1 JASPAR yes 118468168
SNP sites on vista5296[chr1:224545542-224546006]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 224545578 rs58304668 T C
CEBPB POLR2A STAT1
981449
chr1 224545696 rs368332801 TG T
CEBPB PTF SCRT1 STAT1
981450
chr1 224545784 rs6671751 T C
POU4F1 STAT1 STAT2
981451
chr1 224545851 rs112085642 G C
STAT1
981452
chr1 224545995 rs141139061 A G
FOXA1 FOXB1 FOXC1 FOXC2 NR3C1
981453
Genes possibly regulated by vista5296[chr1:224545542-224546006]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 224415036 224518089 - NVL ENSG00000143748.13 224518089 0.7 0.99 1880 72547
chr1 224544552 224567161 + CNIH4 ENSG00000143771.7 224544552 0.76 1.0 1881 99010
chr1 224572845 224624735 - WDR26 ENSG00000162923.10 224624735 0.74 1.0 1882 21271
chr1 224622362 224928251 + CNIH3 ENSG00000143786.3 224622362 0.86 1.0 1883 23644
Expression level of Genes
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miRNAs possibly regulated by vista5296[chr1:224545542-224546006]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results