EnhancerDB
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  3. vista5335[chr1:226163769-226163979]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5335[chr1:226163769-226163979]
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Tissue distribution of vista5335
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Transcription factor that possibly regulate vista5335[chr1:226163769-226163979]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 226163678 226164000 ZNF263 UCSC Txn Factor no Conserved 107875254
chr1 226163684 226164044 CTCF UCSC Txn Factor no Conserved 107875258
chr1 226163713 226163980 RAD21 UCSC Txn Factor no Conserved 107875269
chr1 226163720 226163991 SMC3 UCSC Txn Factor no Conserved 107875271
chr1 226163787 226163808 ZNF263 JASPAR yes 35781326
chr1 226163787 226163808 ZNF263 JASPAR yes 118470104
chr1 226163790 226163811 ZNF263 JASPAR yes 35781327
chr1 226163790 226163811 ZNF263 JASPAR yes 118470105
chr1 226163791 226163812 ZNF263 JASPAR yes 35781328
chr1 226163791 226163812 ZNF263 JASPAR yes 118470106
chr1 226163797 226163803 MZF1 JASPAR yes 35781329
chr1 226163797 226163803 MZF1 JASPAR yes 118470107
chr1 226163806 226163812 MZF1 JASPAR yes 35781330
chr1 226163806 226163812 MZF1 JASPAR yes 118470108
chr1 226163838 226163848 NEUROG2 JASPAR yes 35781331
chr1 226163838 226163848 NEUROG2 JASPAR yes 118470109
chr1 226163840 226163844 YY1 TRANSFAC yes 35781332
chr1 226163840 226163844 YY1 TRANSFAC yes 118470110
chr1 226163854 226163873 CTCF JASPAR yes 35781333
chr1 226163854 226163873 CTCF JASPAR yes 118470111
chr1 226163867 226163882 STAT1 JASPAR yes 35781334
chr1 226163867 226163882 STAT1 JASPAR yes 118470112
chr1 226163869 226163880 STAT1 JASPAR yes 35781335
chr1 226163869 226163880 STAT1 JASPAR yes 118470113
chr1 226163872 226163882 GABPA JASPAR yes 35781336
chr1 226163872 226163882 GABPA JASPAR yes 118470114
chr1 226163899 226163902 MYB TRANSFAC yes 35781337
chr1 226163899 226163902 MYB TRANSFAC yes 118470115
chr1 226163904 226163914 HOXA13 JASPAR yes 35781338
chr1 226163904 226163914 HOXB13 JASPAR yes 35781339
chr1 226163904 226163914 HOXD13 JASPAR yes 35781340
chr1 226163904 226163914 HOXA13 JASPAR yes 118470116
chr1 226163904 226163914 HOXB13 JASPAR yes 118470117
chr1 226163904 226163914 HOXD13 JASPAR yes 118470118
chr1 226163907 226163916 VENTX JASPAR yes 35781341
chr1 226163907 226163916 VENTX JASPAR yes 118470119
chr1 226163978 226163983 MYC TRANSFAC yes 35781342
chr1 226163978 226163983 MYC TRANSFAC yes 118470120
SNP sites on vista5335[chr1:226163769-226163979]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 226163946 rs183821273 C T
CTCF RAD21 SMC3 ZNF263
988956
Genes possibly regulated by vista5335[chr1:226163769-226163979]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 226033237 226070069 - TMEM63A ENSG00000196187.7 226070069 0.82 1.0 1890 6300
chr1 226073982 226099082 - LEFTY1 ENSG00000243709.1 226099082 0.94 0.84 1891 35313
chr1 226074396 226111978 - RP4-559A3.7 ENSG00000255835.1 226111978 0.95 0.92 1892 48209
chr1 226107578 226111978 - PYCR2 ENSG00000143811.12 226111978 0.59 0.99 1893 48209
chr1 226124298 226129189 - LEFTY2 ENSG00000143768.7 226129189 0.96 1.0 1894 65420
chr1 226170403 226187032 - SDE2 ENSG00000143751.9 226187032 0.67 0.99 1895 76947
chr1 226249552 226259702 + H3F3A ENSG00000163041.5 226249552 0.89 0.84 1896 14427
Expression level of Genes
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miRNAs possibly regulated by vista5335[chr1:226163769-226163979]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr1 226109780 226109801 - hsa-miR-6741-3p MIMAT0027384 226111949 0.1975875270999585 0.0 0.0 125
Expression level of miRNAs
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