EnhancerDB
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  3. vista5398[chr1:227953974-227954299]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5398[chr1:227953974-227954299]
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Tissue distribution of vista5398
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Transcription factor that possibly regulate vista5398[chr1:227953974-227954299]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 227953979 227953990 FOXA1 JASPAR yes 35886756
chr1 227953979 227953990 FOXA1 JASPAR yes 118473260
chr1 227953979 227953994 FOXA1 JASPAR yes 35886757
chr1 227953979 227953994 FOXA1 JASPAR yes 118473261
chr1 227953988 227954006 E2F3 JASPAR yes 35886758
chr1 227953988 227954006 E2F3 JASPAR yes 118473262
chr1 227953989 227954005 E2F2 JASPAR yes 35886759
chr1 227953989 227954005 E2F2 JASPAR yes 118473263
chr1 227953996 227954012 SRF JASPAR yes 35886760
chr1 227953996 227954012 SRF JASPAR yes 118473264
chr1 227953996 227954014 SRF JASPAR yes 35886761
chr1 227953996 227954014 SRF JASPAR yes 118473265
chr1 227953999 227954007 GATA3 JASPAR yes 35886762
chr1 227953999 227954007 GATA5 JASPAR yes 35886763
chr1 227953999 227954007 GATA3 JASPAR yes 118473266
chr1 227953999 227954007 GATA5 JASPAR yes 118473267
chr1 227953999 227954011 SRF JASPAR yes 35886764
chr1 227953999 227954011 SRF JASPAR yes 118473268
chr1 227954009 227954018 TFAP2A JASPAR yes 118473269
chr1 227954041 227954056 FOXA1 JASPAR yes 118473270
chr1 227954042 227954053 FOXB1 JASPAR yes 118473271
chr1 227954042 227954053 FOXC1 JASPAR yes 118473272
chr1 227954042 227954054 FOXC2 JASPAR yes 118473273
chr1 227954042 227954054 MEF2D JASPAR yes 118473274
chr1 227954054 227954058 LFA1 TRANSFAC yes 118473275
chr1 227954055 227954064 SNAI2 JASPAR yes 118473276
chr1 227954055 227954066 USF2 JASPAR yes 118473277
chr1 227954064 227954079 ZIC3 JASPAR yes 118473278
chr1 227954064 227954079 ZIC4 JASPAR yes 118473279
chr1 227954065 227954079 ZIC1 JASPAR yes 118473280
chr1 227954084 227954099 ZIC3 JASPAR yes 118473281
chr1 227954113 227954125 PKNOX2 JASPAR yes 118473282
chr1 227954114 227954123 SNAI2 JASPAR yes 118473283
chr1 227954128 227954140 TFAP2A JASPAR yes 118473284
chr1 227954128 227954140 TFAP2B JASPAR yes 118473285
chr1 227954128 227954140 TFAP2C JASPAR yes 118473286
chr1 227954128 227954143 TFAP2A JASPAR yes 118473287
chr1 227954128 227954143 TFAP2C JASPAR yes 118473288
chr1 227954129 227954140 TFAP2A JASPAR yes 118473289
chr1 227954139 227954154 ZIC3 JASPAR yes 118473290
chr1 227954139 227954154 ZIC4 JASPAR yes 118473291
chr1 227954139 227954158 CTCF JASPAR yes 118473292
chr1 227954140 227954154 ZIC1 JASPAR yes 118473293
chr1 227954150 227954158 FOXO3 JASPAR yes 118473294
chr1 227954150 227954161 NFKB1 JASPAR yes 118473295
chr1 227954151 227954161 REL JASPAR yes 118473296
chr1 227954162 227954166 H4TF2 TRANSFAC yes 118473297
chr1 227954173 227954194 REST JASPAR yes 118473298
chr1 227954184 227954188 LFA1 TRANSFAC yes 118473299
chr1 227954189 227954200 BATF JASPAR yes 118473300
chr1 227954191 227954202 FOS JASPAR yes 118473301
chr1 227954191 227954202 FOSL1 JASPAR yes 118473302
chr1 227954191 227954202 JUND JASPAR yes 118473303
chr1 227954192 227954203 FOSL2 JASPAR yes 118473304
chr1 227954192 227954203 JUNB JASPAR yes 118473305
chr1 227954192 227954206 JUN JASPAR yes 118473306
chr1 227954197 227954212 NR2C2 JASPAR yes 118473307
chr1 227954198 227954212 GLIS3 JASPAR yes 118473308
chr1 227954202 227954210 TBX15 JASPAR yes 118473309
chr1 227954234 227954241 E2F1 TRANSFAC yes 118473310
chr1 227954252 227954263 ELK4 JASPAR yes 118473311
chr1 227954252 227954263 FLI1 JASPAR yes 118473312
chr1 227954253 227954263 ELK1 JASPAR yes 118473313
chr1 227954253 227954263 ELK3 JASPAR yes 118473314
chr1 227954253 227954263 ERF JASPAR yes 118473315
chr1 227954253 227954263 ERG JASPAR yes 118473316
chr1 227954253 227954263 ETS1 JASPAR yes 118473317
chr1 227954253 227954263 ETV1 JASPAR yes 118473318
chr1 227954253 227954263 ETV3 JASPAR yes 118473319
chr1 227954253 227954263 ETV4 JASPAR yes 118473320
chr1 227954253 227954263 ETV6 JASPAR yes 118473321
chr1 227954253 227954263 FEV JASPAR yes 118473322
chr1 227954253 227954263 FLI1 JASPAR yes 118473323
chr1 227954253 227954263 GABPA JASPAR yes 118473324
chr1 227954253 227954264 ETV2 JASPAR yes 118473325
chr1 227954253 227954265 ELF4 JASPAR yes 118473326
chr1 227954253 227954266 ELF1 JASPAR yes 118473327
chr1 227954254 227954261 SPI1 JASPAR yes 118473328
chr1 227954254 227954262 EHF JASPAR yes 118473329
chr1 227954254 227954262 FEV JASPAR yes 118473330
SNP sites on vista5398[chr1:227953974-227954299]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 227953996 rs116614060 G A
E2F2 E2F3 SRF
999195
chr1 227954020 rs67502955 G C no 999196
chr1 227954217 rs117233105 C T no 999197
Genes possibly regulated by vista5398[chr1:227953974-227954299]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 227916240 227968927 + SNAP47 ENSG00000143740.10 227916240 0.64 1.0 1907 62266
chr1 227918126 227923112 - JMJD4 ENSG00000081692.8 227923112 0.72 0.99 1908 69138
chr1 228003394 228034171 + PRSS38 ENSG00000185888.5 228003394 0.94 0.0 1909 50905
Expression level of Genes
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miRNAs possibly regulated by vista5398[chr1:227953974-227954299]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results