EnhancerDB
  1. Home
  2. Enhancers
  3. vista5404[chr1:228079986-228080118]
View enhancers around input chromosomal region
Back to top

Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5404[chr1:228079986-228080118]
Back to top
Tissue distribution of vista5404
Back to top
Transcription factor that possibly regulate vista5404[chr1:228079986-228080118]
Back to top
Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 228079981 228079996 PRDM1 JASPAR yes 35891430
chr1 228079981 228079996 PRDM1 JASPAR yes 118473573
chr1 228079983 228080004 ZNF263 JASPAR yes 35891431
chr1 228079983 228080004 ZNF263 JASPAR yes 118473574
chr1 228079990 228080005 PRDM1 JASPAR yes 35891432
chr1 228079990 228080005 PRDM1 JASPAR yes 118473575
chr1 228080016 228080031 TFAP2A JASPAR yes 35891433
chr1 228080016 228080031 TFAP2C JASPAR yes 35891434
chr1 228080016 228080031 TFAP2A JASPAR yes 118473576
chr1 228080016 228080031 TFAP2C JASPAR yes 118473577
chr1 228080018 228080031 TFAP2A JASPAR yes 35891435
chr1 228080018 228080031 TFAP2B JASPAR yes 35891436
chr1 228080018 228080031 TFAP2C JASPAR yes 35891437
chr1 228080018 228080031 TFAP2A JASPAR yes 118473578
chr1 228080018 228080031 TFAP2B JASPAR yes 118473579
chr1 228080018 228080031 TFAP2C JASPAR yes 118473580
chr1 228080019 228080030 EBF1 JASPAR yes 35891438
chr1 228080019 228080030 EBF1 JASPAR yes 118473581
chr1 228080021 228080030 TFAP2A JASPAR yes 35891439
chr1 228080021 228080030 TFAP2A JASPAR yes 118473582
chr1 228080025 228080035 SP1 JASPAR yes 35891440
chr1 228080025 228080035 SP1 JASPAR yes 118473583
chr1 228080039 228080045 SOX10 JASPAR yes 35891441
chr1 228080039 228080045 SOX10 JASPAR yes 118473584
chr1 228080047 228080056 SNAI2 JASPAR yes 35891442
chr1 228080047 228080056 SNAI2 JASPAR yes 118473585
chr1 228080047 228080057 TCF3 JASPAR yes 35891443
chr1 228080047 228080057 TCF4 JASPAR yes 35891444
chr1 228080047 228080057 TCF3 JASPAR yes 118473586
chr1 228080047 228080057 TCF4 JASPAR yes 118473587
chr1 228080049 228080058 ZEB1 JASPAR yes 35891445
chr1 228080049 228080058 ZEB1 JASPAR yes 118473588
chr1 228080051 228080056 SP1 TRANSFAC yes 35891446
chr1 228080051 228080056 SP1 TRANSFAC yes 118473589
chr1 228080052 228080062 SP1 JASPAR yes 35891447
chr1 228080052 228080062 SP1 JASPAR yes 118473590
chr1 228080054 228080058 LFA1 TRANSFAC yes 35891448
chr1 228080054 228080058 LFA1 TRANSFAC yes 118473591
chr1 228080077 228080087 SMAD3 JASPAR yes 35891449
chr1 228080077 228080087 SMAD3 JASPAR yes 118473592
chr1 228080090 228080095 SP1 TRANSFAC yes 35891450
chr1 228080090 228080095 SP1 TRANSFAC yes 118473593
chr1 228080117 228080121 NFE TRANSFAC yes 35891451
chr1 228080117 228080121 NFE TRANSFAC yes 118473594
chr1 228080117 228080122 GATA1 TRANSFAC yes 35891452
chr1 228080117 228080122 GATA1 TRANSFAC yes 118473595
chr1 228080117 228080123 GATA3 JASPAR yes 35891453
chr1 228080117 228080123 GATA3 JASPAR yes 118473596
SNP sites on vista5404[chr1:228079986-228080118]
Back to top
chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 228080000 rs115003734 C T
PRDM1 ZNF263
999723
chr1 228080047 rs67645046 A G
SNAI2 TCF3 TCF4
999724
chr1 228080115 rs4653882 A G no 999725
Genes possibly regulated by vista5404[chr1:228079986-228080118]
Back to top
Details of Genes
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 228003394 228034171 + PRSS38 ENSG00000185888.5 228003394 0.94 0.0 1909 23408
chr1 228106357 228135599 - WNT9A ENSG00000143816.7 228135599 0.82 1.0 1910 44519
Expression level of Genes
Back to top
miRNAs possibly regulated by vista5404[chr1:228079986-228080118]
Back to top
Details of miRNAs
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr1 228129311 228129331 - hsa-miR-5008-3p MIMAT0021040 228135632 0.059554674393777644 0.916667 0.0 127
Expression level of miRNAs
Back to top