EnhancerDB
  1. Home
  2. Enhancers
  3. vista5405[chr1:228098321-228098415]
View enhancers around input chromosomal region
Back to top

Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5405[chr1:228098321-228098415]
Back to top
Tissue distribution of vista5405
Back to top
Transcription factor that possibly regulate vista5405[chr1:228098321-228098415]
Back to top
Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 228098309 228098329 RREB1 JASPAR yes 35893945
chr1 228098309 228098329 RREB1 JASPAR yes 118473597
chr1 228098310 228098331 IRF1 JASPAR yes 35893946
chr1 228098310 228098331 IRF1 JASPAR yes 118473598
chr1 228098311 228098326 FOXP1 JASPAR yes 35893949
chr1 228098311 228098326 FOXP1 JASPAR yes 118473599
chr1 228098314 228098326 IRF1 JASPAR yes 35893950
chr1 228098314 228098326 IRF1 JASPAR yes 118473600
chr1 228098316 228098322 TCF4 TRANSFAC yes 35893951
chr1 228098316 228098322 TCF4 TRANSFAC yes 118473601
chr1 228098316 228098331 FOXP1 JASPAR yes 35893952
chr1 228098316 228098331 FOXP1 JASPAR yes 118473602
chr1 228098319 228098331 IRF1 JASPAR yes 35893953
chr1 228098319 228098331 IRF1 JASPAR yes 118473603
chr1 228098321 228098327 TCF4 TRANSFAC yes 35893954
chr1 228098321 228098327 TCF4 TRANSFAC yes 118473604
chr1 228098353 228098357 NFE TRANSFAC yes 35893955
chr1 228098353 228098357 NFE TRANSFAC yes 118473605
chr1 228098355 228098365 SREBF1 JASPAR yes 35893956
chr1 228098355 228098365 SREBF2 JASPAR yes 35893957
chr1 228098355 228098365 SREBF1 JASPAR yes 118473606
chr1 228098355 228098365 SREBF2 JASPAR yes 118473607
chr1 228098367 228098371 NFE TRANSFAC yes 35893958
chr1 228098367 228098371 NFE TRANSFAC yes 118473608
chr1 228098368 228098373 GATA2 JASPAR yes 35893959
chr1 228098368 228098373 GATA2 JASPAR yes 118473609
chr1 228098368 228098389 ZNF263 JASPAR yes 35893960
chr1 228098368 228098389 ZNF263 JASPAR yes 118473610
chr1 228098375 228098396 ZNF263 JASPAR yes 35893961
chr1 228098375 228098396 ZNF263 JASPAR yes 118473611
chr1 228098393 228098408 TFAP2C JASPAR yes 35893962
chr1 228098393 228098408 TFAP2C JASPAR yes 118473612
chr1 228098394 228098413 REST JASPAR yes 35893963
chr1 228098394 228098413 REST JASPAR yes 118473613
SNP sites on vista5405[chr1:228098321-228098415]
Back to top
chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 228098340 rs4518905 C T no 1000025
Genes possibly regulated by vista5405[chr1:228098321-228098415]
Back to top
Details of Genes
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 228003394 228034171 + PRSS38 ENSG00000185888.5 228003394 0.94 0.0 1909 5073
chr1 228106357 228135599 - WNT9A ENSG00000143816.7 228135599 0.82 1.0 1910 62816
chr1 228194752 228248961 + WNT3A ENSG00000154342.4 228194752 0.98 1.0 1911 3663
Expression level of Genes
Back to top
miRNAs possibly regulated by vista5405[chr1:228098321-228098415]
Back to top
Details of miRNAs
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr1 228129311 228129331 - hsa-miR-5008-3p MIMAT0021040 228135632 0.09150556531927358 0.916667 0.0 127
Expression level of miRNAs
Back to top