EnhancerDB
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  3. vista5409[chr1:228274281-228274680]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5409[chr1:228274281-228274680]
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Tissue distribution of vista5409
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Transcription factor that possibly regulate vista5409[chr1:228274281-228274680]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 228274299 228274312 HSF2 JASPAR yes 35900325
chr1 228274299 228274312 HSF2 JASPAR yes 118473718
chr1 228274303 228274314 STAT3 JASPAR yes 35900326
chr1 228274303 228274314 STAT3 JASPAR yes 118473719
chr1 228274350 228274361 E2F6 JASPAR yes 35900327
chr1 228274350 228274361 E2F6 JASPAR yes 118473720
chr1 228274385 228274395 SP1 JASPAR yes 35900328
chr1 228274385 228274395 SP1 JASPAR yes 118473721
chr1 228274388 228274393 SP1 TRANSFAC yes 35900329
chr1 228274388 228274393 SP1 TRANSFAC yes 118473722
chr1 228274412 228274417 GATA2 JASPAR yes 35900330
chr1 228274412 228274417 GATA2 JASPAR yes 118473723
chr1 228274416 228274422 LEF1 TRANSFAC yes 35900331
chr1 228274416 228274422 SOX10 JASPAR yes 35900332
chr1 228274416 228274422 LEF1 TRANSFAC yes 118473724
chr1 228274416 228274422 SOX10 JASPAR yes 118473725
chr1 228274421 228274424 MYB TRANSFAC yes 35900333
chr1 228274421 228274424 MYB TRANSFAC yes 118473726
chr1 228274430 228274443 POU2F2 JASPAR yes 35900334
chr1 228274430 228274443 POU2F2 JASPAR yes 118473727
chr1 228274444 228274447 MYB TRANSFAC yes 35900335
chr1 228274444 228274447 MYB TRANSFAC yes 118473728
chr1 228274470 228274481 FOSL2 JASPAR yes 35900336
chr1 228274470 228274481 FOSL2 JASPAR yes 118473729
chr1 228274485 228274495 PAX3 JASPAR yes 35900337
chr1 228274485 228274495 PAX3 JASPAR yes 118473730
chr1 228274488 228274496 ISX JASPAR yes 35900338
chr1 228274488 228274496 LHX9 JASPAR yes 35900339
chr1 228274488 228274496 LMX1B JASPAR yes 35900340
chr1 228274488 228274496 PRRX1 JASPAR yes 35900341
chr1 228274488 228274496 RAX2 JASPAR yes 35900342
chr1 228274488 228274496 SHOX JASPAR yes 35900343
chr1 228274488 228274496 UNCX JASPAR yes 35900344
chr1 228274488 228274496 ISX JASPAR yes 118473731
chr1 228274488 228274496 LHX9 JASPAR yes 118473732
chr1 228274488 228274496 LMX1B JASPAR yes 118473733
chr1 228274488 228274496 PRRX1 JASPAR yes 118473734
chr1 228274488 228274496 RAX2 JASPAR yes 118473735
chr1 228274488 228274496 SHOX JASPAR yes 118473736
chr1 228274488 228274496 UNCX JASPAR yes 118473737
chr1 228274491 228274496 MYB TRANSFAC yes 35900345
chr1 228274491 228274496 MYB TRANSFAC yes 118473738
chr1 228274497 228274511 SPIC JASPAR yes 35900346
chr1 228274497 228274511 SPIC JASPAR yes 118473739
chr1 228274502 228274512 SP1 JASPAR yes 35900347
chr1 228274502 228274512 SP1 JASPAR yes 118473740
chr1 228274503 228274508 ETS2 TRANSFAC yes 35900348
chr1 228274503 228274508 ETS2 TRANSFAC yes 118473741
chr1 228274511 228274522 STAT1 JASPAR yes 35900349
chr1 228274511 228274522 STAT1 JASPAR yes 118473742
chr1 228274533 228274539 YY1 JASPAR yes 35900350
chr1 228274533 228274539 YY1 JASPAR yes 118473743
chr1 228274538 228274542 NFE TRANSFAC yes 35900351
chr1 228274538 228274542 NFE TRANSFAC yes 118473744
chr1 228274560 228274563 MYB TRANSFAC yes 35900352
chr1 228274560 228274563 MYB TRANSFAC yes 118473745
chr1 228274578 228274590 TFAP2B JASPAR yes 35900353
chr1 228274578 228274590 TFAP2C JASPAR yes 35900354
chr1 228274578 228274590 TFAP2B JASPAR yes 118473746
chr1 228274578 228274590 TFAP2C JASPAR yes 118473747
chr1 228274602 228274607 MYB TRANSFAC yes 35900355
chr1 228274602 228274607 MYB TRANSFAC yes 118473748
chr1 228274612 228274622 BARHL2 JASPAR yes 35900356
chr1 228274612 228274622 BARHL2 JASPAR yes 118473749
chr1 228274650 228274660 TFCP2 JASPAR yes 35900357
chr1 228274650 228274660 TFCP2 JASPAR yes 118473750
chr1 228274650 228274663 SCRT2 JASPAR yes 35900358
chr1 228274650 228274663 SCRT2 JASPAR yes 118473751
chr1 228274664 228274673 NFIX JASPAR yes 35900359
chr1 228274664 228274673 NFIX JASPAR yes 118473752
chr1 228274665 228274671 NFIC JASPAR yes 35900360
chr1 228274665 228274671 NFIC JASPAR yes 118473753
chr1 228274675 228274688 NFKB2 JASPAR yes 35900361
chr1 228274675 228274688 NFKB2 JASPAR yes 118473754
SNP sites on vista5409[chr1:228274281-228274680]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 228274387 rs139782920 C T
SP1
1001052
chr1 228274408 rs77571032 A G no 1001053
chr1 228274444 rs74140920 G C
MYB
1001054
chr1 228274619 rs73092944 C T
BARHL2
1001055
Genes possibly regulated by vista5409[chr1:228274281-228274680]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 228194752 228248961 + WNT3A ENSG00000154342.4 228194752 0.98 1.0 1911 20471
chr1 228270361 228286912 + ARF1 ENSG00000143761.9 228270361 0.54 1.0 1912 96080
chr1 228288427 228293112 - C1orf35 ENSG00000143793.8 228293112 0.58 1.0 1913 81568
chr1 228294380 228297013 - MRPL55 ENSG00000162910.14 228297013 0.69 1.0 1914 77667
chr1 228327663 228336685 + GUK1 ENSG00000143774.12 228327663 0.7 1.0 1915 47017
chr1 228337553 228347527 + GJC2 ENSG00000198835.3 228337553 0.86 0.99 1916 37127
chr1 228351787 228353213 - IBA57-AS1 ENSG00000203684.5 228353213 0.86 1.0 1917 21467
chr1 228353516 228369958 + IBA57 ENSG00000181873.8 228353516 0.62 1.0 1918 21164
Expression level of Genes
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miRNAs possibly regulated by vista5409[chr1:228274281-228274680]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results