EnhancerDB
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  3. vista5411[chr1:228350789-228351109]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5411[chr1:228350789-228351109]
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Tissue distribution of vista5411
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Transcription factor that possibly regulate vista5411[chr1:228350789-228351109]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 228350284 228351167 POLR2A UCSC Txn Factor no Conserved 107876943
chr1 228350809 228350819 TEAD1 JASPAR yes 35904760
chr1 228350809 228350819 TEAD4 JASPAR yes 35904761
chr1 228350809 228350819 TEAD1 JASPAR yes 118473777
chr1 228350809 228350819 TEAD4 JASPAR yes 118473778
chr1 228350833 228350845 CREB1 JASPAR yes 35904762
chr1 228350833 228350845 CREB1 JASPAR yes 118473779
chr1 228350835 228350849 BATF3 JASPAR yes 35904763
chr1 228350835 228350849 BATF3 JASPAR yes 118473780
chr1 228350838 228350843 ATF1 TRANSFAC yes 35904764
chr1 228350838 228350843 ATF1 TRANSFAC yes 118473781
chr1 228350850 228350857 SPIB JASPAR yes 35904765
chr1 228350850 228350857 SPIB JASPAR yes 118473782
chr1 228350858 228350870 ZBTB7B JASPAR yes 35904766
chr1 228350858 228350870 ZBTB7C JASPAR yes 35904767
chr1 228350858 228350870 ZBTB7B JASPAR yes 118473783
chr1 228350858 228350870 ZBTB7C JASPAR yes 118473784
chr1 228350863 228350869 SP1 TRANSFAC yes 35904768
chr1 228350863 228350869 SP1 TRANSFAC yes 118473785
chr1 228350865 228350870 SP1 TRANSFAC yes 35904769
chr1 228350865 228350870 SP1 TRANSFAC yes 118473786
chr1 228350891 228350901 SP1 JASPAR yes 35904770
chr1 228350891 228350901 SP1 JASPAR yes 118473787
chr1 228350894 228350900 NFE2 TRANSFAC yes 35904771
chr1 228350894 228350900 NFE2 TRANSFAC yes 118473788
chr1 228350917 228350927 GABPA JASPAR yes 35904772
chr1 228350917 228350927 GABPA JASPAR yes 118473789
chr1 228350919 228350925 ETS1 JASPAR yes 35904773
chr1 228350919 228350925 SPI1 JASPAR yes 35904774
chr1 228350919 228350925 ETS1 JASPAR yes 118473790
chr1 228350919 228350925 SPI1 JASPAR yes 118473791
chr1 228350927 228350931 NFE TRANSFAC yes 35904775
chr1 228350927 228350931 NFE TRANSFAC yes 118473792
chr1 228350937 228350947 NFKB1 JASPAR yes 35904776
chr1 228350937 228350947 NFKB1 JASPAR yes 118473793
chr1 228350937 228350948 NFKB1 JASPAR yes 35904777
chr1 228350937 228350948 NFKB1 JASPAR yes 118473794
chr1 228350941 228350955 GLIS2 JASPAR yes 35904778
chr1 228350941 228350955 GLIS3 JASPAR yes 35904779
chr1 228350941 228350955 GLIS2 JASPAR yes 118473795
chr1 228350941 228350955 GLIS3 JASPAR yes 118473796
chr1 228350942 228350954 TFAP2A JASPAR yes 35904780
chr1 228350942 228350954 TFAP2B JASPAR yes 35904781
chr1 228350942 228350954 TFAP2C JASPAR yes 35904782
chr1 228350942 228350954 TFAP2A JASPAR yes 118473797
chr1 228350942 228350954 TFAP2B JASPAR yes 118473798
chr1 228350942 228350954 TFAP2C JASPAR yes 118473799
chr1 228350942 228350957 TFAP2A JASPAR yes 35904783
chr1 228350942 228350957 TFAP2A JASPAR yes 118473800
chr1 228350943 228350952 TFAP2A JASPAR yes 35904784
chr1 228350943 228350952 TFAP2A JASPAR yes 118473801
chr1 228350958 228350962 ESR1 TRANSFAC yes 35904785
chr1 228350958 228350962 ESR1 TRANSFAC yes 118473802
chr1 228350987 228350994 SPIB JASPAR yes 35904786
chr1 228350987 228350994 SPIB JASPAR yes 118473803
chr1 228350987 228350998 FLI1 JASPAR yes 35904787
chr1 228350987 228350998 FLI1 JASPAR yes 118473804
chr1 228350988 228350996 EHF JASPAR yes 35904788
chr1 228350988 228350996 EHF JASPAR yes 118473805
chr1 228350988 228350998 SP1 JASPAR yes 35904789
chr1 228350988 228350998 SP1 JASPAR yes 118473806
chr1 228350997 228351011 MTF1 JASPAR yes 35904790
chr1 228350997 228351011 MTF1 JASPAR yes 118473807
chr1 228351010 228351025 RFX5 JASPAR yes 35904791
chr1 228351010 228351025 RFX5 JASPAR yes 118473808
chr1 228351025 228351037 TEAD1 JASPAR yes 35904792
chr1 228351025 228351037 TEAD1 JASPAR yes 118473809
chr1 228351042 228351046 NFE TRANSFAC yes 35904793
chr1 228351042 228351046 NFE TRANSFAC yes 118473810
chr1 228351042 228351047 GATA1 TRANSFAC yes 35904794
chr1 228351042 228351047 GATA1 TRANSFAC yes 118473811
chr1 228351042 228351048 GATA3 JASPAR yes 35904795
chr1 228351042 228351048 GATA3 JASPAR yes 118473812
chr1 228351068 228351073 SP1 TRANSFAC yes 35904796
chr1 228351068 228351073 SP1 TRANSFAC yes 118473813
chr1 228351068 228351074 SP1 TRANSFAC yes 35904797
chr1 228351068 228351074 SP1 TRANSFAC yes 118473814
chr1 228351076 228351096 PPARG JASPAR yes 35904798
chr1 228351076 228351096 PPARG JASPAR yes 118473815
chr1 228351087 228351101 PLAG1 JASPAR yes 35904799
chr1 228351087 228351101 PLAG1 JASPAR yes 118473816
chr1 228351100 228351112 NHLH1 JASPAR yes 35904800
chr1 228351100 228351112 NHLH1 JASPAR yes 118473817
chr1 228351101 228351111 TFAP4 JASPAR yes 35904801
chr1 228351101 228351111 TFAP4 JASPAR yes 118473818
chr1 228351109 228351124 TFAP2C JASPAR yes 35904802
chr1 228351109 228351124 TFAP2C JASPAR yes 118473819
SNP sites on vista5411[chr1:228350789-228351109]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 228350898 rs576344950 C T
NFE2 POLR2A SP1
1001561
chr1 228350934 rs146981346 G A
POLR2A
1001562
chr1 228350941 rs10799468 G A
GLIS2 GLIS3 NFKB1 POLR2A
1001563
chr1 228350957 rs541144621 C T
POLR2A TFAP2A
1001564
chr1 228350965 rs530236065 C A
POLR2A
1001565
chr1 228351003 rs563820171 G A
MTF1 POLR2A
1001566
chr1 228351034 rs534443476 AG A
POLR2A TEAD1
1001567
chr1 228351072 rs114367787 G A
POLR2A SP1
1001568
chr1 228351087 rs6682260 A C
PLAG1 POLR2A PPARG
1001569
chr1 228351100 rs75842360 G A
NHLH1 PLAG1 POLR2A
1001570
Genes possibly regulated by vista5411[chr1:228350789-228351109]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 228270361 228286912 + ARF1 ENSG00000143761.9 228270361 0.54 1.0 1912 19572
chr1 228288427 228293112 - C1orf35 ENSG00000143793.8 228293112 0.58 1.0 1913 42323
chr1 228294380 228297013 - MRPL55 ENSG00000162910.14 228297013 0.69 1.0 1914 46224
chr1 228327663 228336685 + GUK1 ENSG00000143774.12 228327663 0.7 1.0 1915 76874
chr1 228337553 228347527 + GJC2 ENSG00000198835.3 228337553 0.86 0.99 1916 86764
chr1 228351787 228353213 - IBA57-AS1 ENSG00000203684.5 228353213 0.86 1.0 1917 97896
chr1 228353516 228369958 + IBA57 ENSG00000181873.8 228353516 0.62 1.0 1918 97593
chr1 228391207 228401365 - C1orf145 ENSG00000162913.9 228401365 0.87 1.0 1919 49744
chr1 228395831 228566577 + OBSCN ENSG00000154358.15 228395831 0.83 1.0 1920 55278
Expression level of Genes
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miRNAs possibly regulated by vista5411[chr1:228350789-228351109]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results