EnhancerDB
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  3. vista5413[chr1:228633222-228633907]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5413[chr1:228633222-228633907]
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Tissue distribution of vista5413
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Transcription factor that possibly regulate vista5413[chr1:228633222-228633907]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 228633406 228633790 USF1 UCSC Txn Factor no Conserved 107876968
chr1 228633223 228633233 NFATC3 JASPAR yes 118473851
chr1 228633231 228633234 MYB TRANSFAC yes 118473852
chr1 228633246 228633261 FOXA1 JASPAR yes 118473853
chr1 228633247 228633253 TCF4 TRANSFAC yes 118473854
chr1 228633248 228633260 FOXC2 JASPAR yes 118473855
chr1 228633248 228633262 ONECUT2 JASPAR yes 118473856
chr1 228633248 228633262 ONECUT3 JASPAR yes 118473857
chr1 228633249 228633260 FOXC1 JASPAR yes 118473858
chr1 228633250 228633261 FOXH1 JASPAR yes 118473859
chr1 228633256 228633262 TCF4 TRANSFAC yes 118473860
chr1 228633292 228633298 TCF4 TRANSFAC yes 118473861
chr1 228633311 228633326 FOXA1 JASPAR yes 118473862
chr1 228633312 228633324 FOXI1 JASPAR yes 118473863
chr1 228633312 228633327 FOXP1 JASPAR yes 118473864
chr1 228633313 228633324 FOXP2 JASPAR yes 118473865
chr1 228633313 228633325 FOXC2 JASPAR yes 118473866
chr1 228633314 228633325 FOXB1 JASPAR yes 118473867
chr1 228633314 228633325 FOXC1 JASPAR yes 118473868
chr1 228633321 228633325 TEAD2 TRANSFAC yes 118473869
chr1 228633321 228633326 TBP TRANSFAC yes 118473870
chr1 228633366 228633380 FOXF2 JASPAR yes 118473871
chr1 228633366 228633381 FOXP1 JASPAR yes 118473872
chr1 228633367 228633378 FOXA1 JASPAR yes 118473873
chr1 228633367 228633382 FOXA1 JASPAR yes 118473874
chr1 228633368 228633379 FOXB1 JASPAR yes 118473875
chr1 228633368 228633379 FOXC1 JASPAR yes 118473876
chr1 228633368 228633380 FOXC2 JASPAR yes 118473877
chr1 228633369 228633380 FOXP2 JASPAR yes 118473878
chr1 228633371 228633378 FOXD2 JASPAR yes 118473879
chr1 228633371 228633378 FOXI1 JASPAR yes 118473880
chr1 228633371 228633378 FOXL1 JASPAR yes 118473881
chr1 228633371 228633378 FOXO4 JASPAR yes 118473882
chr1 228633371 228633378 FOXO6 JASPAR yes 118473883
chr1 228633371 228633378 FOXP3 JASPAR yes 118473884
chr1 228633371 228633379 FOXD1 JASPAR yes 118473885
chr1 228633371 228633379 FOXG1 JASPAR yes 118473886
chr1 228633371 228633379 FOXO3 JASPAR yes 118473887
chr1 228633371 228633380 SRY JASPAR yes 118473888
chr1 228633399 228633408 NKX3-2 JASPAR yes 118473889
chr1 228633399 228633409 NKX2-3 JASPAR yes 118473890
chr1 228633400 228633408 ISL2 JASPAR yes 118473891
chr1 228633400 228633409 NKX2-8 JASPAR yes 118473892
chr1 228633405 228633426 ZNF263 JASPAR yes 118473893
chr1 228633419 228633425 MAZ TRANSFAC yes 118473894
chr1 228633423 228633443 ESR1 JASPAR yes 118473895
chr1 228633432 228633451 REST JASPAR yes 118473896
chr1 228633448 228633458 SP1 JASPAR yes 118473897
chr1 228633449 228633456 CEBPA TRANSFAC yes 118473898
chr1 228633484 228633490 SOX10 JASPAR yes 118473899
chr1 228633488 228633500 PKNOX2 JASPAR yes 118473900
chr1 228633488 228633500 TGIF2 JASPAR yes 118473901
chr1 228633493 228633501 MEIS3 JASPAR yes 118473902
chr1 228633494 228633498 NFE TRANSFAC yes 118473903
chr1 228633527 228633538 NFKB1 JASPAR yes 118473904
chr1 228633528 228633538 RELA JASPAR yes 118473905
chr1 228633528 228633538 REL JASPAR yes 118473906
chr1 228633538 228633543 ETS2 TRANSFAC yes 118473907
chr1 228633552 228633567 STAT1 JASPAR yes 118473908
chr1 228633554 228633565 STAT3 JASPAR yes 118473909
chr1 228633572 228633582 SREBF1 JASPAR yes 118473910
chr1 228633572 228633582 SREBF2 JASPAR yes 118473911
chr1 228633579 228633590 DMRT3 JASPAR yes 118473912
chr1 228633582 228633587 GATA1 TRANSFAC yes 118473913
chr1 228633591 228633601 MAX JASPAR yes 118473914
chr1 228633592 228633602 BHLHE40 JASPAR yes 118473915
chr1 228633592 228633602 BHLHE41 JASPAR yes 118473916
chr1 228633592 228633602 CLOCK JASPAR yes 118473917
chr1 228633592 228633602 MAX JASPAR yes 118473918
chr1 228633592 228633602 MLXIPL JASPAR yes 118473919
chr1 228633592 228633602 MLX JASPAR yes 118473920
chr1 228633592 228633602 MNT JASPAR yes 118473921
chr1 228633592 228633602 SREBF2 JASPAR yes 118473922
chr1 228633592 228633602 TFE3 JASPAR yes 118473923
chr1 228633592 228633602 TFEB JASPAR yes 118473924
chr1 228633592 228633602 TFEC JASPAR yes 118473925
chr1 228633594 228633599 MYC TRANSFAC yes 118473926
chr1 228633594 228633599 USF1 TRANSFAC yes 118473927
chr1 228633594 228633599 USF2 TRANSFAC yes 118473928
chr1 228633622 228633625 MYB TRANSFAC yes 118473929
chr1 228633643 228633657 NR2F1 JASPAR yes 118473930
chr1 228633664 228633674 SP1 JASPAR yes 118473931
chr1 228633697 228633713 GLIS1 JASPAR yes 118473932
chr1 228633704 228633709 SP1 TRANSFAC yes 118473933
chr1 228633759 228633779 TP53 JASPAR yes 118473934
chr1 228633815 228633827 ZBTB7A JASPAR yes 118473935
chr1 228633816 228633828 GLI2 JASPAR yes 118473936
chr1 228633816 228633828 ZBTB7B JASPAR yes 118473937
chr1 228633816 228633828 ZBTB7C JASPAR yes 118473938
chr1 228633866 228633874 USF1 TRANSFAC yes 118473939
chr1 228633890 228633895 GATA2 JASPAR yes 118473940
SNP sites on vista5413[chr1:228633222-228633907]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 228633313 rs144827070 G A
FOXA1 FOXC2 FOXI1 FOXP1 FOXP2
1002587
chr1 228633332 rs10916314 A T no 1002588
chr1 228633450 rs371128279 G C
CEBPA REST SP1 USF1
1002589
chr1 228633493 rs16848618 G C
MEIS3 PKNOX2 TGIF2 USF1
1002590
chr1 228633669 rs111913139 G A
SP1 USF1
1002591
chr1 228633715 rs188684343 T C
USF1
1002592
chr1 228633718 rs1886774 C T
USF1
1002593
chr1 228633790 rs370049317 C G
USF1
1002594
chr1 228633794 rs2104436 A G no 1002595
chr1 228633846 rs191479242 T C no 1002596
chr1 228633889 rs554626845 G A no 1002597
chr1 228633894 rs4494131 C T
GATA2
1002598
Genes possibly regulated by vista5413[chr1:228633222-228633907]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 228581374 228594541 - TRIM11 ENSG00000154370.9 228594541 0.68 1.0 1921 61319
chr1 228595641 228604562 - TRIM17 ENSG00000162931.7 228604562 0.89 1.0 1922 71340
chr1 228612546 228613026 - HIST3H3 ENSG00000168148.3 228613026 0.84 0.89 1923 79804
chr1 228645065 228645560 - HIST3H2A ENSG00000181218.4 228645560 0.89 0.99 1924 88347
chr1 228645808 228646259 + HIST3H2BB ENSG00000196890.3 228645808 0.92 0.96 1925 88099
chr1 228674762 228683467 + RNF187 ENSG00000168159.9 228674762 0.68 1.0 1926 59145
Expression level of Genes
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miRNAs possibly regulated by vista5413[chr1:228633222-228633907]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr1 228649826 228649846 + hsa-miR-4666a-3p MIMAT0019742 228645803 0.010026820713843615 0.0 0.0 129
Expression level of miRNAs
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