EnhancerDB
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  3. vista5415[chr1:228640073-228640088]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista5415[chr1:228640073-228640088]
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Tissue distribution of vista5415
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Transcription factor that possibly regulate vista5415[chr1:228640073-228640088]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 228640071 228640085 GLIS2 JASPAR yes 35913456
chr1 228640071 228640085 GLIS3 JASPAR yes 35913457
chr1 228640071 228640085 ZIC1 JASPAR yes 35913458
chr1 228640071 228640085 GLIS2 JASPAR yes 118473955
chr1 228640071 228640085 GLIS3 JASPAR yes 118473956
chr1 228640071 228640085 ZIC1 JASPAR yes 118473957
chr1 228640071 228640086 NR2C2 JASPAR yes 35913459
chr1 228640071 228640086 NR2C2 JASPAR yes 118473958
chr1 228640075 228640081 SP1 TRANSFAC yes 35913460
chr1 228640075 228640081 SP1 TRANSFAC yes 118473959
chr1 228640077 228640082 SP1 TRANSFAC yes 35913461
chr1 228640077 228640082 SP1 TRANSFAC yes 118473960
SNP sites on vista5415[chr1:228640073-228640088]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 228640079 rs74513678 C T
GLIS2 GLIS3 NR2C2 SP1 ZIC1
1002650
Genes possibly regulated by vista5415[chr1:228640073-228640088]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 228581374 228594541 - TRIM11 ENSG00000154370.9 228594541 0.68 1.0 1921 54468
chr1 228595641 228604562 - TRIM17 ENSG00000162931.7 228604562 0.89 1.0 1922 64489
chr1 228612546 228613026 - HIST3H3 ENSG00000168148.3 228613026 0.84 0.89 1923 72953
chr1 228645065 228645560 - HIST3H2A ENSG00000181218.4 228645560 0.89 0.99 1924 94528
chr1 228645808 228646259 + HIST3H2BB ENSG00000196890.3 228645808 0.92 0.96 1925 94280
chr1 228674762 228683467 + RNF187 ENSG00000168159.9 228674762 0.68 1.0 1926 65326
Expression level of Genes
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miRNAs possibly regulated by vista5415[chr1:228640073-228640088]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr1 228649826 228649846 + hsa-miR-4666a-3p MIMAT0019742 228645803 0.021690618584307774 0.0 0.0 129
Expression level of miRNAs
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